Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  171 bits (433), Expect = 9e-47
 Identities = 107/334 (32%), Positives = 185/334 (55%), Gaps = 5/334 (1%)

Query: 274 SILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQRLALISNKKDEFN 331
           S +VA VI  VL +LL  M+   L + L  +GR +  +++G  DL++RL + S  +DEF 
Sbjct: 277 SAIVATVIAVVLIILLLGMLLSVLLRPLNLMGRAMHDIAAGEGDLTKRLVIES--QDEFG 334

Query: 332 QLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATE 391
            L    N   E +   +  V   +V L+  A+ +  A ++ +        +T  +A+A  
Sbjct: 335 HLGNGFNLFVERIHDSMREVASSTVQLNEVALRVLNASNSSMLNSDQQSHRTNSVAAAIN 394

Query: 392 EVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQ 451
           E+   TQ+++ +    +  S  +   A++G  V+   I ++  +   + SA+  I+ L  
Sbjct: 395 ELGAATQEIAQNAARASGHSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNT 454

Query: 452 ASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSE 511
            +A +  ++D+I GI++QTNLLALNAAIEAA AGE GRGFAVVADEVRSLA RT  + S+
Sbjct: 455 KTANIGQILDVITGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQ 514

Query: 512 ISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSS 571
           +   IE ++  + E +  MN S++   E     N+A+ +L+ +T+   E     + + ++
Sbjct: 515 VQEMIEQLQSGAREAVSIMNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAA 574

Query: 572 IKELSATSQAMAESMSQISSA-MQALESYNTQLR 604
            +E +A  +A+   +++I++   Q +E+ N  LR
Sbjct: 575 TEEQTAVVEAINVDITEINTLNQQGVENLNATLR 608