Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  158 bits (399), Expect = 7e-43
 Identities = 136/485 (28%), Positives = 229/485 (47%), Gaps = 40/485 (8%)

Query: 142 LKKLAVTIEKKIDETGMVTINSDFQAMIKAQQNYLLQPNEQNLRL----FNRALAGFVSM 197
           L +L    +K   E    +IN + +   K    Y   P E + R     ++  +  ++S 
Sbjct: 70  LYRLLDAKDKATAEKMRQSINGELERAQKVYAIYRATPLEDDERAAGDQYDALMPAYMSA 129

Query: 198 SQSYAMLDLYKA-EIEQFKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEV 256
           SQ+  + DL +A ++E  +    R++ L+      E     +    Q +I+S  ++++E 
Sbjct: 130 SQN--IFDLQQAGKLEDARN---RLNALA------EGEFNKARGYLQIMIDSNKRQIKEG 178

Query: 257 SSRYQSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDL 316
           +     L   +       I++A V+  +L +L+  M++  L  A+     V ++++SGDL
Sbjct: 179 AEAADRLQSTSVFMLTAGIVIAFVVAIMLGILITRMITRPLRSAI----EVAQRIASGDL 234

Query: 317 SQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQ 376
           +Q ++  S + DE   L  A+     NL   +  +   S  L+  A  L    +   RG 
Sbjct: 235 TQSVS--STRGDEAGHLLNAIGTMQGNLKRTIQEISSASDQLASAAEELGAVTEESTRGL 292

Query: 377 SDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVG 436
           +   D+ Q+ A+A  E++   ++V+ +    +  SK+    AA G   +   +  +  + 
Sbjct: 293 TRQNDEIQQAATAVNEMTAAVEEVARNAVSTSEESKSLATDAANGRGQVDNTVKGIGTMV 352

Query: 437 SILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVAD 496
           S +  +   +  L      +  V+++I  IAEQTNLLALNAAIEAA AGEQGRGFAVVAD
Sbjct: 353 SEITESTGSVTTLAGHVRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 412

Query: 497 EVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQ 556
           EVR+LA RT  +  EI G I T++  +   +  M++S  T    Q    +A  AL++IT 
Sbjct: 413 EVRALAHRTQASTVEIEGMIGTVQSGADGAVAAMSKSLATATNTQELAQRAGSALEKITS 472

Query: 557 GTD-----------------EAASQTERIFSSIKELSATSQAMAESMSQISSAMQAL-ES 598
           G                   + A + +R   +I+ELSA S A A   S  S  +  L  S
Sbjct: 473 GVGMINERNMVIASASEEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSRLATS 532

Query: 599 YNTQL 603
           +NT +
Sbjct: 533 FNTMV 537