Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  174 bits (441), Expect = 1e-47
 Identities = 120/463 (25%), Positives = 226/463 (48%), Gaps = 18/463 (3%)

Query: 173 QNYLLQPNEQNLRLFNRALAGFVSMS---------QSYAMLDLYKAEIEQFKTTFLRVSE 223
           + YL  PN  N +   +A    ++           ++ A +D     ++Q+K     +S+
Sbjct: 228 RRYLSVPNADNRQATYKAADALIAQVDAARSQLPVEANAAVDAALVALKQYKVLMTSISD 287

Query: 224 LSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVILA 283
           + QQ + I  +L            +TA R +++++     A+K  +  ++ +L   +++ 
Sbjct: 288 MLQQTEQIRNDLQQQSV-------ATAARADDLAALQVISAKKEQQTAVVQLLSVALVVL 340

Query: 284 VLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCEN 343
           ++ +    +++  ++  L        +++ GDL+   +  + ++DE   L   +     +
Sbjct: 341 LVGIFAAFLITRQITVPLNSTVIAARRIADGDLTHDSS--TTRQDELGLLQNTMQHMTVS 398

Query: 344 LGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHS 403
           L GL+  + +    ++  A  L+   +    G +   ++  ++A+A  E++ T Q+V+ +
Sbjct: 399 LRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARN 458

Query: 404 LEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDII 463
            E  +  +K ++  AA GS V+  A   + ++   +Q     +Q+L + S K+ SV+D+I
Sbjct: 459 TEDASQAAKQASERAAHGSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKIGSVIDVI 518

Query: 464 NGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKES 523
             +AEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA RT N+ +EI   I+ ++K +
Sbjct: 519 KAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALIQALQKGT 578

Query: 524 AEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMA 583
                 M+ S Q  E       QA QAL  I Q        +++I ++ ++ SA ++ + 
Sbjct: 579 GAASGLMDASLQRTEGTVVLARQAEQALVEINQSIGTIEQMSQQISAAAEQQSAVTEEIN 638

Query: 584 ESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
            S+  +        S   Q   ++ E+      L+    RF +
Sbjct: 639 RSVLSVRDIADQSASATEQSAASTVELARLGSDLQSMVARFKI 681



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 424 VISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQT-----NLLALNAA 478
           VIS+ +  LRE+   +        QL   + KVD  +  I  +++       NLL     
Sbjct: 137 VISSNLAKLREIKEQVGGLKQTFDQLVGINQKVDEALKPIIKVSDDVSATFENLLNKTID 196

Query: 479 IEAACAGEQGRGFAVVADEVRS------LAVRTVNAVSEISGTIETMKKESAEVILFMNQ 532
                  E G     +A ++R+      L  R   +V        T K   A +      
Sbjct: 197 DTLRAPNETGIRQVKIAGDLRNGMTNFRLVFRRYLSVPNADNRQATYKAADALIAQVDAA 256

Query: 533 SEQTMEEGQSKGNQAMQALQR---ITQGTDEAASQTERIFSSIKELSATSQAMAESMS-- 587
             Q   E  +  + A+ AL++   +     +   QTE+I + +++ S  + A A+ ++  
Sbjct: 257 RSQLPVEANAAVDAALVALKQYKVLMTSISDMLQQTEQIRNDLQQQSVATAARADDLAAL 316

Query: 588 QISSAMQALESYNTQL 603
           Q+ SA +  ++   QL
Sbjct: 317 QVISAKKEQQTAVVQL 332