Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  175 bits (444), Expect = 5e-48
 Identities = 125/478 (26%), Positives = 238/478 (49%), Gaps = 27/478 (5%)

Query: 172 QQNYLLQPNEQNLRLFNRALAGFVSMSQ------SYAMLDLYKAEIEQFKTTFLRVSELS 225
           +Q  L+   + +LRL    + G+ + +       + + LD    +++  KTTF      +
Sbjct: 167 EQYRLVTDAKDDLRLARYEVRGYTTNATPETEQAAVSKLDSAIKDLDALKTTFSGTQ--A 224

Query: 226 QQVKDIEKNLLSSEATAQGVIESTA---QRLEEVSSRYQSLAEKAGEQTLLSI------- 275
            Q++ +E +L++   T Q    +T    Q  +E++++ Q + + + +   L +       
Sbjct: 225 DQLRQLETSLMAYRTTLQNFKAATGTIVQARKEMTTQGQDIVKISEDMYKLQLDRRDQES 284

Query: 276 ------LVACVILAV-LTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKD 328
                  + C +LA+ L ++  ++++  +++ L +   V+++++SGDL+Q LA+   + D
Sbjct: 285 AQARTTQITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASGDLTQTLAV--TRSD 342

Query: 329 EFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLAS 388
           E   L   + +    L  L+  ++D  V ++  A  L+   +    G +    +T ++A+
Sbjct: 343 ELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVAT 402

Query: 389 ATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQ 448
           A  E+S T  +V+ + E  +  +  +   A +G KV+  AI  +  + + +  +   + +
Sbjct: 403 AMHEMSATVAEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTE 462

Query: 449 LEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNA 508
           LEQ S K+  VMD+I  +AEQTNLLALNAAIEAA AGE GRGFAVVADEVR LA RT  +
Sbjct: 463 LEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQS 522

Query: 509 VSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERI 568
             EI   +  ++  + +V   M  S +      +   QA  +L  ITQ      +  ++I
Sbjct: 523 TVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQI 582

Query: 569 FSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
            ++ +E SA ++ ++ S+  +    +   S + +   +S E+      L+    RF +
Sbjct: 583 AAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSRFRI 640



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 69/288 (23%)

Query: 26  LAVFTAQSLSKMNSQYQQSGDVTAGSAALFATQAQLFELAAEREHLSSNKVSEIKTRLAQ 85
           L+  T Q+ + +NSQ  ++  V      + AT A++   A +    +SN   E +     
Sbjct: 379 LSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAASNADREAR----- 433

Query: 86  LMQKVEGDKRFLAENNFANEGNALQQAVQAFNDDMQPWLEIKGELGFNVD-----DGKLA 140
                +GDK           G A+ Q  +  N           E+G +VD     + +  
Sbjct: 434 -----DGDKVV---------GEAIAQIERLAN-----------EVGRSVDAMTELEQESD 468

Query: 141 ELKKLAVTIEKKIDETGMVTINSDFQ-----------AMIKAQQNYLLQPNEQNLRLFNR 189
           ++ K+   I+   ++T ++ +N+  +           A++  +   L Q  +Q+      
Sbjct: 469 KIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIET 528

Query: 190 ALAGFVSMSQSYAMLDLYKAEIEQFKTTFLR---------------VSELSQQV------ 228
            +A   S ++  + + L   E+     T  R               +  ++QQ+      
Sbjct: 529 LVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEE 588

Query: 229 -KDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGE-QTLLS 274
              + + +  S    + V E TA   EE ++    LA   G+ QT++S
Sbjct: 589 QSAVAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVS 636