Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  160 bits (404), Expect = 2e-43
 Identities = 143/613 (23%), Positives = 277/613 (45%), Gaps = 36/613 (5%)

Query: 21  LGFIGLAVFTAQSLSKMNSQYQQSGDVTAGSAALFATQAQLFELAAEREHLSSNKVSEIK 80
           +   GL  F+A  L  ++   QQ  ++     +L   +   F        L    + + K
Sbjct: 19  IAMFGLQRFSAAKLDDLSHAAQQVIELEKDVLSLRRDEKDFFA------RLDLAYLDKHK 72

Query: 81  TRLAQLMQKVEGDKRFLAENNFANEGNALQQAVQAFNDDMQPW-------LEIKGELGFN 133
           T+  +L      D++ ++     +  +  Q  +QAF  ++  +        E++ ++G +
Sbjct: 73  TQAREL------DEKMVSLGAIFDRHDISQSDLQAFRQNLTRYESIFAEIAELQKQIGLH 126

Query: 134 VDDGKLAELKKLAVTIEKKIDETGMVTINSDFQAMIKAQQNYLLQPNEQNLRLFNRALAG 193
             DG    L+     +E  + E     +      + + +++++L+     L  F   LA 
Sbjct: 127 PKDGLYGALRSAVHNVETLVKEKNEPELMVTMLQLRRNEKDFMLRRAMSYLDKFKGNLAL 186

Query: 194 FVSMSQSYAMLDLYKAE----IEQFKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIEST 249
                    + D  K E    I+ ++  F  +    Q++  ++K+   S A+ +  I S 
Sbjct: 187 LRQQVSGAMLSDSVKGELNALIDDYEKNFKALVSKEQEL-GLDKDS-GSMASLRDSISSA 244

Query: 250 AQRLEEVSSRYQSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLE 309
            + L ++ ++       A   T   + ++ V+  ++T++L       +   +  + R+ +
Sbjct: 245 EKSLVQLKAQSMDAISDAESAT---VTISIVVFILITLVLIGFTLAIIRSIMEPVQRISD 301

Query: 310 KLSSGDLSQRLALISNKK--DEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQ 367
            +S  + ++ L L  + K  DE  Q+A   N   E+   L+  V      ++     L++
Sbjct: 302 AISRIEATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSE 361

Query: 368 AIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISA 427
                  G    +++T  +A+A  E+  T  +++ + E+ A  +  +   A +G   +  
Sbjct: 362 NSMRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEH 421

Query: 428 AIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQ 487
            I  ++ + + L  +A  + +LE+ S  + SV+D+I GIAEQTNLLALNAAIEAA AGEQ
Sbjct: 422 TIEKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQ 481

Query: 488 GRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQA 547
           GRGFAVVADEVRSLA+RT  +  EI+G I+T++  +  ++  M   E T  +G    +QA
Sbjct: 482 GRGFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLM---EATQRQGIESADQA 538

Query: 548 MQA---LQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLR 604
             A   L++I          + +I ++I+E S  +  + +++  I            +  
Sbjct: 539 ASAGALLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENA 598

Query: 605 VTSREVETRAESL 617
             S +V+ R + L
Sbjct: 599 KASDDVKARTQVL 611