Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  152 bits (383), Expect = 4e-41
 Identities = 107/349 (30%), Positives = 189/349 (54%), Gaps = 24/349 (6%)

Query: 277 VACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFA 336
           VA + L  L  L +  +S SL   L  +   +++L+ GDLS RL      KD+F+ +A  
Sbjct: 135 VALIALYPLYQLSYW-ISTSLGGGLWDMYIAIKRLADGDLSFRLNFFG--KDDFSLIARE 191

Query: 337 VNKSCENLGGLVHVVQDRSVALSGDAVALNQAID--NLVRGQSDVMDQTQR-----LASA 389
           ++++ +N+  +V        A+  +A  L  A D  NL   Q+D + Q Q      +A A
Sbjct: 192 IDRNADNMSEMVK-------AIGNNARTLANASDEFNLQAKQNDELAQFQHQFLDTVAVA 244

Query: 390 TEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQL 449
            ++++   ++VSH+    ++ +K +  AAA+  + I+ A+  + ++   + +A+S + QL
Sbjct: 245 MDQMTAAIEEVSHNAANTSDHTKHNATAAADSKQRIAEAVRRIGQLTGQIDAASSAVDQL 304

Query: 450 EQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAV 509
              + ++ +V+  INGI+EQTNLLALNAAIEAA AGEQGRGFAVVADEVR+LA RT  A 
Sbjct: 305 SGNATEIGAVVTTINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQAT 364

Query: 510 SEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIF 569
            EI   IE ++  S ++    ++  +  E G++       A++ +    D  A   +++F
Sbjct: 365 VEIQSMIEGLQSGSGQLADITHEIVEQAELGRA-------AIESVGSDVDTMADSIDQVF 417

Query: 570 SSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLE 618
               +++A+++  + S   I+S +  +   +  ++ T+      A  L+
Sbjct: 418 DMSSQIAASAEEQSVSARDIASQLNEIRDQSQTIKETAERSVVLASELQ 466