Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  169 bits (427), Expect = 5e-46
 Identities = 125/406 (30%), Positives = 202/406 (49%), Gaps = 9/406 (2%)

Query: 219 LRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVA 278
           L+ S+L   V+     +  S  +    IEST+Q    VS +     + A  +TL  +L+A
Sbjct: 276 LQASQLLNTVESNATAVNQSMGSLNKAIESTSQA---VSVKAIDEIDSASYKTLALVLIA 332

Query: 279 CVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVN 338
            V+     VL+ + V   L  +L ++   L  L+SG+L+ +L    +  DEF +L+   N
Sbjct: 333 IVV----AVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLD--DSGHDEFAELSRNCN 386

Query: 339 KSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQ 398
           +  ++L  L+  + DRS  L+  A   +        G  +  +Q  ++A+AT ++S +  
Sbjct: 387 RLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAM 446

Query: 399 QVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDS 458
           QVS S +   N  + +   A     +      ++  +   +  A   I ++   SA + S
Sbjct: 447 QVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGS 506

Query: 459 VMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIET 518
           ++D+I GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA RT ++  EI   I+ 
Sbjct: 507 ILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQV 566

Query: 519 MKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSAT 578
           +++ + E +  M    Q       K  QA  AL+ I+     A      I ++ +E +  
Sbjct: 567 LQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLV 626

Query: 579 SQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRF 624
           SQ ++E +  I++  +   +   Q   +S +V   AE L+     F
Sbjct: 627 SQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEF 672



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 50/297 (16%), Positives = 123/297 (41%), Gaps = 52/297 (17%)

Query: 298 SKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVA 357
           SK L Q+      LS G ++           E +QL   +    +NLGG +  ++    +
Sbjct: 75  SKELPQVRSQFTSLSKGFIT-----------ELDQLNRIIQGHEDNLGGQIKSLRANYQS 123

Query: 358 LSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLA 417
            + +++ + QA +  ++ Q  ++D  + L  A ++   T   +   +++  +        
Sbjct: 124 FNDNSLKMMQAREQSLQTQESLVDNLESLEGAADD---TASLLLDLIDLETSQDPTEREI 180

Query: 418 AAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGI-AEQTNLLALN 476
           AA  S + ++         +++ S+   +   E++  K ++++  ++ I +E  N L   
Sbjct: 181 AATASNIDNS-------FSNLITSSYDLVNAKEKS--KYETILKELDYIISEAQNKLEYV 231

Query: 477 AAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQT 536
           +           R +  V D+                  ++ +  E+++V   +N  +  
Sbjct: 232 S-----------RHWEGVIDQE----------------ALDNINTEASKVFTMLNGPDSI 264

Query: 537 MEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMA-ESMSQISSA 592
           ++    + +  +QA Q +      A +  + + S  K + +TSQA++ +++ +I SA
Sbjct: 265 LKRKGQQLDFNLQASQLLNTVESNATAVNQSMGSLNKAIESTSQAVSVKAIDEIDSA 321