Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis sensory transducer from Marinobacter adhaerens HP15

 Score =  155 bits (392), Expect = 4e-42
 Identities = 99/343 (28%), Positives = 178/343 (51%)

Query: 275 ILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLA 334
           IL+  V++ V+ +++ + V  S+++ L  +  ++++++ G+   R  L     DE  +L 
Sbjct: 195 ILLVTVVVVVIALVIGVFVGRSVTRPLKNVSNMMQEIADGEGDLRQRLPDEGTDELAELG 254

Query: 335 FAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVS 394
              N     +   +  V   +  ++  A  L++  +       +   +T ++ASA  E++
Sbjct: 255 RRFNAFVVKIQDTMREVGATTDQVASAAEELSRVANETRASVQEQGSETDQIASAINEMA 314

Query: 395 LTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASA 454
            T QQ+S +   V + +  +   A EG + IS+A G++ ++   ++  A  I  L + S 
Sbjct: 315 ATIQQISGNANEVESSASDADRMAREGGETISSAQGAVNKLSEEIEDTARSINALAEKSD 374

Query: 455 KVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISG 514
           ++  V+D+I+ + EQTNLLALNAAIEAA AGE GRGF+VVADEVR LA R+  +  +I  
Sbjct: 375 EIQQVLDVIHAVTEQTNLLALNAAIEAARAGEHGRGFSVVADEVRQLAKRSAESADQIRT 434

Query: 515 TIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKE 574
            I+    ES   +  MN+S     E   + N A  AL+ I     +   Q  +I ++ ++
Sbjct: 435 MIDGFVTESKASVERMNKSRNRSTETVERINHATSALRTIETSVGKIHDQVTQIATASEQ 494

Query: 575 LSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESL 617
            S  ++ + +++ +I  A Q  ++  TQ    S E+    ESL
Sbjct: 495 QSQVAEEINQNVVRIVDAAQRSDTGVTQTNEASHELARLGESL 537



 Score = 35.4 bits (80), Expect = 7e-06
 Identities = 67/353 (18%), Positives = 140/353 (39%), Gaps = 49/353 (13%)

Query: 106 GNALQQAVQAFNDDMQPWLEIKGELGFNVDD---GKLAELKKLAVTIEKKIDETGMVTIN 162
           G ++ + ++  ++ MQ   + +G+L   + D    +LAEL +       KI +T      
Sbjct: 214 GRSVTRPLKNVSNMMQEIADGEGDLRQRLPDEGTDELAELGRRFNAFVVKIQDT------ 267

Query: 163 SDFQAMIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVS 222
                 + A  + +    E+  R+ N   A   S+ +  +  D   + I +   T  ++S
Sbjct: 268 ---MREVGATTDQVASAAEELSRVANETRA---SVQEQGSETDQIASAINEMAATIQQIS 321

Query: 223 ----ELSQQVKDIEKNLLSSEAT---AQGVIESTAQRLEEVSSRYQSLAEKAGE-QTLLS 274
               E+     D ++       T   AQG +   ++ +E+ +    +LAEK+ E Q +L 
Sbjct: 322 GNANEVESSASDADRMAREGGETISSAQGAVNKLSEEIEDTARSINALAEKSDEIQQVLD 381

Query: 275 ILVACVILAVLTVLLFMMVSFSLSKA---------LTQIGRVLEKLSSGDLSQRLALISN 325
           ++ A   +   T LL +  +   ++A         +    R L K S+    Q   +I  
Sbjct: 382 VIHA---VTEQTNLLALNAAIEAARAGEHGRGFSVVADEVRQLAKRSAESADQIRTMIDG 438

Query: 326 KKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQR 385
              E       +NKS           ++RS            A+  +      + DQ  +
Sbjct: 439 FVTESKASVERMNKS-----------RNRSTETVERINHATSALRTIETSVGKIHDQVTQ 487

Query: 386 LASATEEVSLTTQQVSHSLEVVANVSKASTLAAA---EGSKVISAAIGSLREV 435
           +A+A+E+ S   ++++ ++  + + ++ S        E S  ++    SLR++
Sbjct: 488 IATASEQQSQVAEEINQNVVRIVDAAQRSDTGVTQTNEASHELARLGESLRDL 540