Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (455), Expect = 2e-49
 Identities = 129/459 (28%), Positives = 241/459 (52%), Gaps = 25/459 (5%)

Query: 187 FNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVSELSQQVKDIEKNLLSS-----EAT 241
           F  A + F + +Q YA L+    + EQ    F+++ E +++      +L+S+      A+
Sbjct: 90  FETAKSEFEAGAQQYAKLNFVSEQDEQL---FIKLGEAAEKYFSAHSSLVSAIDQGDMAS 146

Query: 242 AQGVIES-TAQRLEEVSSRYQSLA---EKAGEQT------------LLSILVACVILAVL 285
           A  +I++ T Q LE       +L    ++A ++             +LSI+V    +  +
Sbjct: 147 ANIMIKTLTRQTLEVAGEETMNLRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFV 206

Query: 286 TVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLG 345
            V+ F+++   +   +  + +   ++S+G+L+ +L + +  +DEF QLA + N+  +NL 
Sbjct: 207 VVMAFLLIR-QIQNPIMWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLH 265

Query: 346 GLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLE 405
            LV  V +  V LS  A  ++    +         ++  +LA+A  E+  T Q V+ +  
Sbjct: 266 MLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTN 325

Query: 406 VVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIING 465
             AN +  ++  A +GS+ ++ +I  + +V   +++ A  I++L   S  +  V+++I G
Sbjct: 326 DAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQG 385

Query: 466 IAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAE 525
           IAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR+LA RT ++ S I+  I  ++  + E
Sbjct: 386 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANE 445

Query: 526 VILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAES 585
               M QS++ M E   K  +A +++ +I+      +    +I ++ +E  A S+ +  +
Sbjct: 446 AEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRN 505

Query: 586 MSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRF 624
           ++ IS A + + +   Q+ +   ++   A  L+   ++F
Sbjct: 506 VANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKF 544