Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (375), Expect = 5e-40
 Identities = 97/336 (28%), Positives = 169/336 (50%), Gaps = 14/336 (4%)

Query: 275 ILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLA 334
           IL+  +I+A   ++L ++V+ S+S+ + Q+  +   +  G+   R  L  N KDE  QLA
Sbjct: 291 ILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLA 350

Query: 335 FAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVS 394
              N     +   V  V   S  L   A  ++      +    +  D+T  + +A  E+ 
Sbjct: 351 QGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMG 410

Query: 395 LTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASA 454
            T  +++ +    A  +K +   +  G  V++ A  ++ ++   ++     I+ L   + 
Sbjct: 411 ATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTK 470

Query: 455 KVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISG 514
            +  ++D+I  I+EQTNLLALNAAIEAA AGE GRGFAVVADEVR+LA RT  + +E+ G
Sbjct: 471 SIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQG 530

Query: 515 TIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQ--------------GTDE 560
            I+ ++ E++  +  M QS     EG +  ++A Q+L  I++               T+E
Sbjct: 531 MIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEE 590

Query: 561 AASQTERIFSSIKELSATSQAMAESMSQISSAMQAL 596
            ++  E I  ++ E++  +Q  A +    + A  AL
Sbjct: 591 QSTVVEDINRNVTEINDITQRTASTAQAAAQASLAL 626