Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  184 bits (466), Expect = 1e-50
 Identities = 142/475 (29%), Positives = 235/475 (49%), Gaps = 32/475 (6%)

Query: 168 MIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVSELSQQ 227
           +I  + +Y+L   +  L   NR   G V        L+    ++++   T L  S+   Q
Sbjct: 211 LISKELDYILSETKNKLEYVNRHAEGIVDADT----LESINQDVKKV-LTLLEGSDSMVQ 265

Query: 228 VKDIEKNLLSSEATAQGVIESTAQ----RLEEVSSRYQSLAEKAGEQTLLSILVAC---V 280
            K  + N   + +    +IE   +     +EEVS   +++A +  + T+  I  A    +
Sbjct: 266 QKANQLNHAQAASNQLAIIEKDVKVIDRNMEEVSDNIEAVAAQMSQATITQIDAASFRTM 325

Query: 281 ILAVLTVLLFMMVSFS----LSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFA 336
           I+ ++ +++ +++SF+    L ++L Q+   L  L+SG+L+ +L    + +DEF +LA  
Sbjct: 326 IVVLIAIVVAIIISFAVVTPLKRSLNQVNNALNVLASGNLTHKLD--DSSQDEFAELAKN 383

Query: 337 VNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLT 396
            N+  ++L GL+  + DRS  L+  A   +        G  +   Q  ++A+AT E+S +
Sbjct: 384 CNRLVDSLRGLIAGILDRSNQLAAAAEQTSAITAQTTTGIQEQKSQVDQVATATTELSSS 443

Query: 397 TQQVSHSL-EVVANVSKASTLA------AAEGSKVISAAIGSLREVGSILQSAASHIQQL 449
            QQVS S  + +A + +A   A      A E    I A    + + G +       I ++
Sbjct: 444 AQQVSMSANDALAQIKQADQEAKHMRAIAEENKHTILALAEEVAKAGQV-------INKV 496

Query: 450 EQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAV 509
              SA + S++D+I GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA RT  + 
Sbjct: 497 HSDSAAIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVST 556

Query: 510 SEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIF 569
            EI   IE +++ + + +  M+           K  QA  AL+ I+Q   +A      I 
Sbjct: 557 REIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQANLALETISQSVHKAYDAGTHIA 616

Query: 570 SSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRF 624
            + +E +  SQ ++E +  I++  +       Q   +S +V   AE L+     F
Sbjct: 617 HAAQEQNLVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGEF 671