Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 4e-44
 Identities = 105/373 (28%), Positives = 198/373 (53%), Gaps = 4/373 (1%)

Query: 256 VSSRYQSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG- 314
           ++  Y S  +++  + ++  L+   +++V     F++++ S++  L      LE ++ G 
Sbjct: 175 ITGAYLSDVKESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGE 234

Query: 315 -DLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLV 373
            DLSQRL+  +  KDE   LA A N   + +G +V  +Q    +L  DA  L  A++   
Sbjct: 235 GDLSQRLS--TQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESN 292

Query: 374 RGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLR 433
           +    +  +T  +A+A  ++  TT +++ + +  A+ + +    A +   VI   +    
Sbjct: 293 QSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTE 352

Query: 434 EVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAV 493
           ++   L+++ +  Q+L QAS ++ S++D+I  IAEQTNLLALNAAIEAA AG  GRGFAV
Sbjct: 353 KLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAV 412

Query: 494 VADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQR 553
           VADEVR+LA RT ++ +EI   I  ++     V+   +Q+++  EE Q+K  +A QA+  
Sbjct: 413 VADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAA 472

Query: 554 ITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETR 613
           I +     +    ++ S+ +E S  ++ +  ++  IS   +     N      ++ ++  
Sbjct: 473 ILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDI 532

Query: 614 AESLEHDCRRFTL 626
           ++ + H   +F +
Sbjct: 533 SQDMSHTLGQFKI 545



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 48/221 (21%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 211 IEQFKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRY---QSLAEKA 267
           + Q  +T   ++  +QQ  D   ++ S    ++GVI++T +  E++       +++ +K 
Sbjct: 309 VNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQKL 368

Query: 268 GEQT--LLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISN 325
           G+ +  + SIL     +A  T LL +  +   ++A +  GR    ++     +  AL + 
Sbjct: 369 GQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSH-GRGFAVVA----DEVRALANR 423

Query: 326 KKDEFNQLAFAVNKSCENLGGLVH---VVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQ 382
            +D  N++   +++    +G ++      Q +S  L   A    QA+  ++   + + D 
Sbjct: 424 TQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDM 483

Query: 383 TQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSK 423
             +LASATEE SL T++++ ++  ++ +++ S  A    S+
Sbjct: 484 NTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSR 524