Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (379), Expect = 1e-40
 Identities = 129/456 (28%), Positives = 214/456 (46%), Gaps = 67/456 (14%)

Query: 210 EIEQFKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAG- 268
           +I Q  TT    S+L +Q +    +L+S     QG+   +   + +  S  Q++A   G 
Sbjct: 62  KINQVATTLY--SKLPEQERPNISSLVS-----QGLQNISIVSISQADSSAQTIARNGGG 114

Query: 269 ---------------EQTLLSILVA-------------CVILAVLTVLLFMMVSFS---- 296
                          EQ LL+I+                +I +V+ VLLF++  FS    
Sbjct: 115 IDTNSTPERVISALSEQNLLTIITVDNREINTLLADDNLLIYSVMAVLLFVLFLFSYYIS 174

Query: 297 --LSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQD- 353
             +  AL      L++ +SGDL+ RL      KDEF+ LA +++   E    LV  + + 
Sbjct: 175 TFVGGALYTTVMALKRAASGDLTGRLNFFE-VKDEFSLLAISIDTLVERQHNLVKQIAES 233

Query: 354 -----------RSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSH 402
                      R+ A  G A+A+NQ                  LA+A EE++   ++V+ 
Sbjct: 234 TFKIREVVSSFRNTAQQGQALAVNQR------------QHLDSLATAMEEMTAAVKEVAR 281

Query: 403 SLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDI 462
           + E     ++ +      GSK I   + ++  +   + +A++ +  L   ++K+D V+  
Sbjct: 282 NAEQSCAETQEANQQVNAGSKDIETTVSAIDVLSDEISAASNAVNTLNDKASKIDEVVST 341

Query: 463 INGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKE 522
           IN I++QTNLLALNAAIEAA AGEQGRGFAVVADEVR+LA RT  A  EI   IE++++ 
Sbjct: 342 INAISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIESLQQG 401

Query: 523 SAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAM 582
           +  +   M+++     EG+    +  + LQ I   +      +  I +S +E SA +  +
Sbjct: 402 TRNLTQVMSRTVSQASEGKQHVLKTGKDLQSIAHHSSRVFEMSVLIATSAEEQSAVANEI 461

Query: 583 AESMSQISSAMQALESYNTQLRVTSREVETRAESLE 618
           A ++ +I +    +E    Q      E++  A  L+
Sbjct: 462 ATNLMEIRNQSHDVEQSANQSVSGCDELQATAGQLD 497