Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (405), Expect = 2e-43
 Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 5/348 (1%)

Query: 280 VILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNK 339
           VI  ++ V +F M    L +    +  + E    GDL+ R+   +N  DE   LA   N+
Sbjct: 287 VIFGLVLVAIFKMQFKDLERVALALNDIAE--GDGDLTVRIHT-ANSHDEIGILASGFNR 343

Query: 340 SCENLGGLVHVVQDRSVALSGDAVALN-QAIDNLVRGQSDVMDQTQRLASATEEVSLTTQ 398
             E L G++  + + +  L   A   +  A DN  R +    D+   +A+A  E++  T+
Sbjct: 344 FVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQ-QDEVTMVATAVTEMASATE 402

Query: 399 QVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDS 458
           +++ + E  A  ++ +   +  G K +  +  S+R + + + +A   I +L + S K++S
Sbjct: 403 EIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINS 462

Query: 459 VMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIET 518
           ++  I+GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR L+ RT ++  EI   IET
Sbjct: 463 ILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIET 522

Query: 519 MKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSAT 578
           +++ + + +  M QS    E   +  N A ++L +I++  +E +    +I ++ +E ++ 
Sbjct: 523 LQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSV 582

Query: 579 SQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
           +  +  +   I    + L        V S+E+   A SL+ +  RF L
Sbjct: 583 TSEINRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 38/229 (16%), Positives = 100/229 (43%), Gaps = 21/229 (9%)

Query: 208 KAEIEQFKTTFLR--VSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAE 265
           + E++Q + T +   V+E++   ++I  N   +  TAQ  +  +    ++V    QS+  
Sbjct: 379 RIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRN 438

Query: 266 KAGEQTLLSILVACV--ILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALI 323
            A E      +++ +      +  +L  +   +    L  +   +E   +G+  +  A++
Sbjct: 439 LANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVV 498

Query: 324 SNKKDEFNQLAFAVNKSCENLGGLVHVVQ--------------DRSVALSGDAVALNQAI 369
           +   DE   L+   + S + +  ++  +Q              D +     DA + ++++
Sbjct: 499 A---DEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESL 555

Query: 370 DNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAA 418
             + +  +++ D   ++A+A EE +  T +++ + E +  VS+  ++ A
Sbjct: 556 LQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEA 604