Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  176 bits (445), Expect = 4e-48
 Identities = 140/523 (26%), Positives = 246/523 (47%), Gaps = 31/523 (5%)

Query: 113 VQAFNDDMQPWLEIKGELGFNVDDGKLAELKKLAVTIEKKI----DETGMVTINSDFQAM 168
           V  FN  + P  + + +L     D K  E++K+   I +      D  G      + + +
Sbjct: 123 VDIFNQQVVPNQQQRAKLVTGTLDVKGPEIEKIISQIMQYSFTDGDVQGAFYAGKNLREL 182

Query: 169 IKAQ---QNYLLQPNEQNLRLFNRALAG-FVSMSQSYAMLD--LYKAEIEQFKTTFLRVS 222
           + A+     +LL       + F   +     +M +  A LD   Y+++++Q         
Sbjct: 183 LLARLYVSKFLLDNQADQAQRFRDEIVNTHTTMDELAAALDNLTYQSQVKQAAGLLTEYE 242

Query: 223 ELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGE-------QTLLSI 275
           + +  V     N   +      +    AQ   ++         +AG+       Q +  I
Sbjct: 243 QAANSVVTAINNRNQAIVQLDNIGIEMAQMTSDLQDNTMKSLSEAGDKAAKEVSQKITFI 302

Query: 276 LVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQRLALISNKKDEFNQL 333
            +  +I  +L+  + ++V+ SL + + ++  +L +++ G  DL+QRL +  N  DE  QL
Sbjct: 303 NIILLIAILLSAFITVIVTQSLLRTIREVVALLNEIADGEADLTQRLPV--NGHDELTQL 360

Query: 334 AFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEV 393
           A   N+    +  LV  V+D +V +   +  LN    +  +  S   ++TQ +ASA  E+
Sbjct: 361 AKNFNRFVLRIQQLVAEVKDTTVQMVSASTQLNSVTHSATQDMSSQQNETQLVASAITEM 420

Query: 394 SLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQAS 453
           + +  +V+ S +    +S+ +   A  G + ++ A  S+RE+ S ++++A+ I+QL   S
Sbjct: 421 AASAVEVAASADTANKLSEDAKAQALLGRETVTRATHSMRELASKVEASATTIEQLRNDS 480

Query: 454 AKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEIS 513
            K+ +V+D+I  IAEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA RT  +  +I 
Sbjct: 481 DKIGAVLDVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQESTKQIQ 540

Query: 514 GTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIK 573
             I+T++  S      M QS +               ++++TQ     ++ TE + S   
Sbjct: 541 QIIQTLQDRSGSAATMMGQSREATN----------STVEQVTQVESALSTITEMVMSITH 590

Query: 574 ELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAES 616
            +S  + A  +  + +     ++ S N     T   V+  A S
Sbjct: 591 SVSQMAHAAEQQSTVVEEINMSINSVNDSANRTLTGVKQAASS 633