Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  167 bits (424), Expect = 1e-45
 Identities = 111/344 (32%), Positives = 194/344 (56%), Gaps = 9/344 (2%)

Query: 262 SLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQ-IGRVLEKLSS-----GD 315
           +L     EQ +  I +  +++ V+ +L+   +++ ++K++T+ I    + L+      GD
Sbjct: 266 ALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGD 325

Query: 316 LSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRG 375
           L++R+ + S  KDE  QLA A N+  E +   V  V D +  L+  A  ++       + 
Sbjct: 326 LTRRIEVKS--KDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQM 383

Query: 376 QSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREV 435
            +    +T+++A+A  E++ T Q+V+H+    A+ +  ++ +  +G  ++   I ++  +
Sbjct: 384 ANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLL 443

Query: 436 GSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVA 495
              +  AA+ I +LE+ + ++DSV+ +I  IA+QTNLLALNAAIEAA AGEQGRGFAVVA
Sbjct: 444 ADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVA 503

Query: 496 DEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRIT 555
           DEVR+LA RT  + +EI   IET+++ +   +  MN S  T +   S  ++A  AL+ IT
Sbjct: 504 DEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAIT 563

Query: 556 QGTDEAASQTERIFSSIKELSATSQAMAESMSQISS-AMQALES 598
           Q     +    +I S+  E  A S  + ++++ I+  A  A ES
Sbjct: 564 QAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATES 607



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 457 DSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTI 516
           D++ DI  G  + T  + + +  E A   +  + F   A+++ +   +  ++ S ++ + 
Sbjct: 314 DALNDIAEGEGDLTRRIEVKSKDEMA---QLAQAFNRFAEKIHATVAQVSDSTSLLATSA 370

Query: 517 ETMKK--------------ESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAA 562
           E M                E+ +V   MN+   T++E       A  A    ++ T++  
Sbjct: 371 EEMSAITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGK 430

Query: 563 SQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQL 603
              E++ S+I  L       A+ ++Q ++A+  LE   TQ+
Sbjct: 431 LLVEKVISTISLL-------ADEIAQAANAINELERNTTQI 464