Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  147 bits (371), Expect = 1e-39
 Identities = 99/347 (28%), Positives = 184/347 (53%), Gaps = 6/347 (1%)

Query: 253 LEEVSSRY-QSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKL 311
           +E V   Y Q++ E+  +++ + +L+A V+  + T  + M+ +  +   +  +   L  +
Sbjct: 181 IEAVVEDYRQTVTEQMADKSFMILLIALVLTGI-TAFIIMVAAHRMVVPIKNMADSLNDI 239

Query: 312 SSG--DLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAI 369
           + G  DL++RL++    +DE  QL  A N   + L  ++  V + +  +   A A++   
Sbjct: 240 AKGEGDLTKRLSV--KGEDEIAQLGQAFNLFVDKLQTIIGDVANATAKVKSAANAIHDQT 297

Query: 370 DNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAI 429
             +        ++T ++ +A  E+S T  +V+ +   VA  ++A+T   A   + + A++
Sbjct: 298 KVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASL 357

Query: 430 GSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGR 489
             +  + S + +AA  I+ L + S K++SV+ +I GIAEQTNLLALNAAIEAA AGEQGR
Sbjct: 358 EEIAGLMSQINNAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGR 417

Query: 490 GFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQ 549
           GFAVVADEVR+LA RT  +  EI+  +  + K  +  +  M++S+Q+            +
Sbjct: 418 GFAVVADEVRNLASRTQASTLEINEMLSELHKLVSVAVKTMDESQQSCVRSVDSSRAISE 477

Query: 550 ALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQAL 596
           +L  +T         + +I ++  E S+ ++ +  ++  I   +  L
Sbjct: 478 SLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNEL 524