Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  181 bits (459), Expect = 9e-50
 Identities = 137/475 (28%), Positives = 237/475 (49%), Gaps = 32/475 (6%)

Query: 168 MIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFK----TTFLRVSE 223
           +I  + +Y+L   +  L   NR     +      ++ +  K  +   +       L+ ++
Sbjct: 211 LISKELDYILSETKNKLEYVNRHAQDIIDADTLKSVNEDTKKVLALLEGPDSMVLLKATQ 270

Query: 224 LSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACV--- 280
           L+       K+ ++  AT +  ++   + +E+VS+  +S+A    ++T+  I  A +   
Sbjct: 271 LNHA-----KSAMNQLATIEKDVKVIDRNMEDVSNNIESVAANMSQETIAKIDAASIRTI 325

Query: 281 ILAVLTVLLFMMVSFS----LSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFA 336
           I+ ++ ++  +++SF+    L ++L Q+   L  L+SG+L+ +L    +  DEF +LA  
Sbjct: 326 IVVLIAIVAAVIISFAVVAPLKRSLYQVNNALNVLASGNLTHKLD--DSGHDEFAELAKN 383

Query: 337 VNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLT 396
            N+  ++L GL+  + DRS  L+  A   +        G  +   Q  ++A+AT E+S +
Sbjct: 384 CNRLVDSLRGLIVGILDRSNQLAAAAEQTSAITAQTTSGIQEQKSQVDQVATATTELSSS 443

Query: 397 TQQVSHSLE-VVANVSKASTLA------AAEGSKVISAAIGSLREVGSILQSAASHIQQL 449
            QQVS S +  +A + +A   A      A E  + I A    + + G +       I ++
Sbjct: 444 AQQVSMSADDALAQIKQADQEAKHMRTIAEENKRTILALADEVAKAGQV-------INKV 496

Query: 450 EQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAV 509
           +  SA + S++D+I GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA RT  + 
Sbjct: 497 QSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVST 556

Query: 510 SEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIF 569
            EI   IE +++ + + +  M+           K  QA  AL+ I+Q   +A      I 
Sbjct: 557 REIQQMIEVLQQGAQQAVAAMDMGRAQANACVDKTEQANLALETISQSVHKAYDAGTHIA 616

Query: 570 SSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRF 624
            + +E +  SQ ++E +  I++  +       Q   +S +V   AE L+     F
Sbjct: 617 HAAQEQNVVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGEF 671