Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  158 bits (400), Expect = 5e-43
 Identities = 140/524 (26%), Positives = 253/524 (48%), Gaps = 39/524 (7%)

Query: 121 QPWLEIKGELG--FNVDD--------GKL--AELKKLAVTIEKKIDETGM---VTINSDF 165
           Q W +I G+LG   +V D        GKL  AE ++ A  +  +    G+   + I+ + 
Sbjct: 43  QKWQQIDGQLGSLLSVIDIHRQDALSGKLSEAEAQQAAANLIDQTRYAGVGYFIVIDDNN 102

Query: 166 QAMIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVSELS 225
           Q +   +++ L+  +  N +L N         +    ML L +    Q   T L     +
Sbjct: 103 QILAHGERSDLIGTSALNFKLQN-------GTNPLATMLPLAR----QNGKTMLEYPIAN 151

Query: 226 QQVKDIEKNLLSSEATAQ-GVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVILAV 284
              K+IE  L+ +    + G    T   L +V    QSL     +  ++  L+   +++V
Sbjct: 152 PVSKNIEDKLVEARYYPEWGWTLITGAYLSDVK---QSL-----KAVIIDYLIIMFLISV 203

Query: 285 LTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQRLALISNKKDEFNQLAFAVNKSCE 342
                F++++ S++  L      LE ++ G  DLSQRL+  +  KDE   LA A N   +
Sbjct: 204 PIFAFFLVLNHSITSPLNDAIDALEDIAQGEGDLSQRLS--TQGKDEVAHLAHAFNLFAQ 261

Query: 343 NLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSH 402
            +G +V  +Q    +L  DA  L  A++   +    +  +T  +A+A  ++  TT +++ 
Sbjct: 262 KIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMAS 321

Query: 403 SLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDI 462
           + +  A+ + +    A +   VI   +    ++   L+++    Q+L Q+SA++ S++D+
Sbjct: 322 NTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRASEVITQKLGQSSAQIGSILDV 381

Query: 463 INGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKE 522
           I  IAEQTNLLALNAAIEAA AG  GRGFAVVADEVR+LA RT ++ +EI   I  ++  
Sbjct: 382 IRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQDSTNEIQKIISDIQMG 441

Query: 523 SAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAM 582
              V+   +Q++   +E Q+K  +A  A+  I Q     +    ++ S+ +E S  ++ +
Sbjct: 442 VNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHISDMNTQLASATEEQSLVTEEI 501

Query: 583 AESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
             ++  IS   +     N      ++ ++  ++ + H   +F +
Sbjct: 502 NRNICNISELTEVSVKANEGNSRAAQSLQDISQDMSHTLGQFKI 545