Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  149 bits (377), Expect = 2e-40
 Identities = 128/444 (28%), Positives = 208/444 (46%), Gaps = 65/444 (14%)

Query: 222 SELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAG------------- 268
           ++L +Q +    NLLS     QG+       + E  SR Q+LA   G             
Sbjct: 72  NKLPEQEQQNLPNLLS-----QGMQNVRIVTVSEADSRAQTLARSGGGIDTSSSPQRAIS 126

Query: 269 ---EQTLLSILVA-------------CVILAVLTVLLFMMVSFS------LSKALTQIGR 306
               Q L++I+                ++  V+ VLLF++  FS      +  AL     
Sbjct: 127 SVNAQNLVTIIPVDDRAIDALLADDNILVYGVMAVLLFVLFLFSYYISTFVGGALYTTVM 186

Query: 307 VLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQD------------R 354
            L++ +SGDL+ RL      KDEF+ LA +++   E    LV  + +            R
Sbjct: 187 ALKRAASGDLTGRLNFFE-VKDEFSILAISIDTLVERQHTLVKQIAESTSKIREVVSSFR 245

Query: 355 SVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKAS 414
           S A  G A+A+NQ                  LA+A EE++   ++V+ + E  +  ++ +
Sbjct: 246 STAQQGQALAVNQR------------QHLDSLATAMEEMTAAVKEVARNAEQSSAETQEA 293

Query: 415 TLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLA 474
                 GSK I   + ++  +   + +A+  +  L + ++K+D V+  IN I++QTNLLA
Sbjct: 294 NQQVNAGSKDIETTVSAIDVLSDEISAASDAVNILNENASKIDEVVSTINAISQQTNLLA 353

Query: 475 LNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSE 534
           LNAAIEAA AGEQGRGFAVVADEVR+LA RT  A  EI   IE++++ S  +   M+++ 
Sbjct: 354 LNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIESLQQGSRNLTQVMSRTV 413

Query: 535 QTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQ 594
               EG+    Q  + L+ I   +      +  I +S +E SA +  +A ++ +I +   
Sbjct: 414 SQASEGKQHVLQTGKDLESIAHHSSRVFEMSVLIATSAEEQSAVANEIATNLMEIRNQSH 473

Query: 595 ALESYNTQLRVTSREVETRAESLE 618
            +E    Q      E++  A  L+
Sbjct: 474 DVEQSANQSVSGCDELQATAGQLD 497