Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  165 bits (418), Expect = 5e-45
 Identities = 111/365 (30%), Positives = 197/365 (53%), Gaps = 4/365 (1%)

Query: 264 AEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIG---RVLEKLSSGDLSQRL 320
           A +  E++LL + +  ++     VL+ +++SF L ++L  +    R +E L +GD S  L
Sbjct: 301 ANELNEESLLLLTINAIVAVTGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPL 360

Query: 321 ALIS-NKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDV 379
              + + ++E +++  +V+     L  L+  +Q    ++   A    +           +
Sbjct: 361 PPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIEQQASKAQRIAKQNGEEAQAL 420

Query: 380 MDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSIL 439
           M QT ++A+A EE+S + + V++  +  AN S+   LAA EG +  +  +  L ++   L
Sbjct: 421 MQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL 480

Query: 440 QSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVR 499
            S+   ++++ Q S  +  V ++IN IAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR
Sbjct: 481 SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 540

Query: 500 SLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTD 559
           +LA RT +++ EIS TI+ ++ +       M QS Q      ++G +  + L+ IT+   
Sbjct: 541 TLAQRTQSSILEISQTIDKLQSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIG 600

Query: 560 EAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEH 619
           E A  +  I S+ ++ S+ +Q +  ++ QIS      E    +   ++ ++ + A +L+ 
Sbjct: 601 ELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHRAAETVNSANDLSSLAVALKQ 660

Query: 620 DCRRF 624
              +F
Sbjct: 661 QISQF 665