Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  155 bits (392), Expect = 5e-42
 Identities = 102/347 (29%), Positives = 183/347 (52%), Gaps = 3/347 (0%)

Query: 280 VILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNK 339
           VI  ++ V +F +    L +    +  + E    GDL+ R+   +N  DE   LA   N+
Sbjct: 287 VIFGLVLVAIFKIQFKDLERVALALNDIAE--GDGDLTVRIHT-ANSHDEIGILASGFNR 343

Query: 340 SCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQ 399
             E L G++  +   +  L   A   + +  +  +  +   D+   +A+A  E++  T++
Sbjct: 344 FVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEE 403

Query: 400 VSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSV 459
           ++ + E  A  ++ +   +  G K +  +  S+R + + +++A   I +L + S K++S+
Sbjct: 404 IASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSI 463

Query: 460 MDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETM 519
           +  I+GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR L+ RT ++  EI   IET+
Sbjct: 464 LLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETL 523

Query: 520 KKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATS 579
           ++ + + +  M QS    E   +  N A ++L +I++  +E +    +I ++ +E ++ +
Sbjct: 524 QQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVT 583

Query: 580 QAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
             +  +   I    + L        V ++E+   A SL+ +  RF L
Sbjct: 584 SEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL 630



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 49/303 (16%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 154 DETGMVTINSDFQAMIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQ 213
           DE G++   S F   ++     + + ++   +L  +A     S + +   + + + E+  
Sbjct: 332 DEIGILA--SGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTM 389

Query: 214 FKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLL 273
             T    V+E++   ++I  N   +  TAQ  +  +    ++V    QS+   A E    
Sbjct: 390 VATA---VTEMASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETA 446

Query: 274 SILVACV--ILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFN 331
             +++ +      +  +L  +   +    L  +   +E   +G+  +  A+++   DE  
Sbjct: 447 GRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVA---DEVR 503

Query: 332 QLAFAVNKSCENLGGLVHVVQ--------------DRSVALSGDAVALNQAIDNLVRGQS 377
            L+   + S + +  ++  +Q              D +     DA + ++++  + +  +
Sbjct: 504 VLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAIN 563

Query: 378 DVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAA----AEGSKVISAAIGSLR 433
           ++ D   ++A+A EE +  T +++ + E +  VS+  ++ A     +  ++   A    +
Sbjct: 564 EISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQ 623

Query: 434 EVG 436
           EVG
Sbjct: 624 EVG 626