Pairwise Alignments
Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3
Score = 172 bits (437), Expect = 3e-47
Identities = 133/516 (25%), Positives = 256/516 (49%), Gaps = 17/516 (3%)
Query: 109 LQQAVQAFNDDMQPWLEIKGELGFNVDDGKLAELKKLAVTIEKKIDETGMVTINSDFQAM 168
L Q AFN+ +Q ++ E+G G L+ +E + E +++ +
Sbjct: 106 LNQYQVAFNEVVQ----LQQEIGLTPKTGLYGTLRTAVHNVESMLKEYDQLSLEVAMLQL 161
Query: 169 IKAQQNYLLQPNEQNLRLFNRALAGF-VSMSQSYAMLDLYK---AEIEQFKTTFLRVSEL 224
+ +++++L+ + F+ +A F S+ S D A IEQ++ F +
Sbjct: 162 RRNEKDFMLRREMSYVETFDSNIAQFNTSLRASSLDFDTQNKIAALIEQYQKDFKSLVNK 221
Query: 225 SQQVKDIEKN-LLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVILA 283
QQ+ EK+ ++ A + E++A L ++ + ++ + + ILV +I
Sbjct: 222 EQQLGLSEKDGTMAKLIAANKLTEASADELHNLALK--AIDDTESSSVNIGILVFVIIAL 279
Query: 284 VLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALI--SNKKDEFNQLAFAVNKSC 341
+L V+ ++++ +T + R+ + +S ++S+ L L ++ +DE ++A N
Sbjct: 280 ILAVITYLIIR----SIITPVERITQVISRIEVSKDLTLRCDASTQDELGEIAQHFNSMV 335
Query: 342 ENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVS 401
+ L+ V D ++ ++++ G + +++T +A+A E+ T +++
Sbjct: 336 GSFQQLIEQVIDSVATINTSCKSVSENAMLASEGVAQQLNETDMVATAITEMGATIDEIA 395
Query: 402 HSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMD 461
+ E+ A + + A G + I +R++ + S+AS + +LE+ S + SV+D
Sbjct: 396 KTTELAALKAGKTHDNAQLGQTEVEQTILKIRQLSEQINSSASVVDELERDSETIGSVLD 455
Query: 462 IINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKK 521
+I GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVRSLA+RT + EI+ I+T++
Sbjct: 456 VIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQTSTQEIANIIQTLQS 515
Query: 522 ESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQA 581
+ ++ M+ S++ E + A + L+ I + +I ++I+E S +
Sbjct: 516 RTRAIVQLMDASQKQGAESAEQAAAAGELLKLINTDVHNIMDMSTQIAAAIEEQSMVAAE 575
Query: 582 MAESMSQISSAMQALESYNTQLRVTSREVETRAESL 617
+ +++ I + S E+++RAE L
Sbjct: 576 VNKNVVVIRDIAEDSSRAADANASASDELKSRAEYL 611
Score = 51.6 bits (122), Expect = 1e-10
Identities = 89/450 (19%), Positives = 188/450 (41%), Gaps = 81/450 (18%)
Query: 107 NALQQAVQAFNDDMQPWLEIKGELGFNVDDGKLAELKKLAVTIEKKIDETGMVTINSDFQ 166
N + ++ + D + + + +LG + DG +A+L E DE
Sbjct: 202 NKIAALIEQYQKDFKSLVNKEQQLGLSEKDGTMAKLIAANKLTEASADEL--------HN 253
Query: 167 AMIKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVSELSQ 226
+KA + + + N+ + + + +Y ++ +E+ R+
Sbjct: 254 LALKAIDD--TESSSVNIGILVFVIIALILAVITYLIIRSIITPVERITQVISRI----- 306
Query: 227 QVKDIEKNL-LSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVILAVL 285
++ K+L L +A+ Q + AQ + +Q L E+ + ++ +I +C ++
Sbjct: 307 ---EVSKDLTLRCDASTQDELGEIAQHFNSMVGSFQQLIEQVID-SVATINTSCKSVSEN 362
Query: 286 TVLLFMMVSFSLSK------ALTQIGRVLE--------------------KLSSGDLSQR 319
+L V+ L++ A+T++G ++ +L ++ Q
Sbjct: 363 AMLASEGVAQQLNETDMVATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQTEVEQT 422
Query: 320 LALISNKKDEFNQLAFAVN---KSCENLGGLVHVVQDRSVALSGDAVALNQAID-----N 371
+ I ++ N A V+ + E +G ++ V+ R +A + +ALN AI+
Sbjct: 423 ILKIRQLSEQINSSASVVDELERDSETIGSVLDVI--RGIAEQTNLLALNAAIEAARAGE 480
Query: 372 LVRGQSDVMDQTQRLA----SATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISA 427
RG + V D+ + LA ++T+E++ Q + + + AS AE ++ +A
Sbjct: 481 QGRGFAVVADEVRSLAMRTQTSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAA 540
Query: 428 AIGSLR----EVGSILQSA---ASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIE 480
A L+ +V +I+ + A+ I++ +A+V+ + +I IAE ++
Sbjct: 541 AGELLKLINTDVHNIMDMSTQIAAAIEEQSMVAAEVNKNVVVIRDIAEDSS--------R 592
Query: 481 AACAGEQGRGFAVVADEVRSLAVRTVNAVS 510
AA A A +DE++S A V+AVS
Sbjct: 593 AADAN------ASASDELKSRAEYLVSAVS 616