Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  194 bits (493), Expect = 1e-54
 Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 7/249 (2%)

Query: 12  LIATTISGV--TQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCAEMQVECK 69
           L+A  +S V  T A   + ++ GIE AYPPF+  +A G + GFD D+ +ALCA+M+VEC+
Sbjct: 8   LLAAAVSLVFSTSAMAVEKLKMGIEAAYPPFNNKDASGQVVGFDKDIGDALCAKMKVECE 67

Query: 70  IVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKGADLAFTK 129
           +V  +WDGIIP+L+A+K+D +I+++S+ +ERK+ VDFT  Y     +FIA K  D    K
Sbjct: 68  VVTSNWDGIIPALMAKKFDFLISSLSVNDERKQAVDFTDPYYSNKLQFIAPKNVDFKVDK 127

Query: 130 EGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVLGDASALEE 189
           E LKG  IG QR+T    ++ D  G  +    Y + + AYLDL +GR+ A+L D   +  
Sbjct: 128 ESLKGKVIGAQRSTLAGTWLEDELGSDITAKLYDTQENAYLDLTSGRVDAILAD-KYVNY 186

Query: 190 GMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALREKGIYQQIQ 249
             L    G AYEF G    DP   G+ + IAVRK + EL  KL+AA+  +   G Y++I 
Sbjct: 187 DWLKTEAGRAYEFKG----DPVVEGDKIAIAVRKGNDELRNKLNAALKEILADGTYKKIN 242

Query: 250 AKYFKYDVY 258
            KYF + +Y
Sbjct: 243 DKYFPFSIY 251