Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 263 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  213 bits (543), Expect = 2e-60
 Identities = 122/268 (45%), Positives = 161/268 (60%), Gaps = 19/268 (7%)

Query: 1   MDMKKWLVATALIA-----------TTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSL 49
           + MKK   ATAL A           T   GV  A+  +T+RF  EGA+PPF++T+A G  
Sbjct: 2   ISMKK--TATALFAAAGILLGGQAVTMALGVADARA-ETIRFATEGAFPPFNFTDAAGKP 58

Query: 50  KGFDVDMANALCAEMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGK 109
           +GFD+D+ANALCA+++ EC +V QDWDGIIP LLA+KYDAIIA+MSIT ER++ V FT  
Sbjct: 59  QGFDIDIANALCAQLKAECSMVTQDWDGIIPGLLAKKYDAIIASMSITPERQQSVLFTDA 118

Query: 110 YAQIPNKFIAKKGADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAY 169
           Y      F+  KG D   +K GLKG  IG QRAT   ++I D  GDTV +  Y + +EAY
Sbjct: 119 YYNNQFHFVGPKGKDFDLSKAGLKGKAIGAQRATVSSQWIEDTLGDTVSLNLYDTAEEAY 178

Query: 170 LDLANGRIAAVLGDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELT 229
           LDL  GR+  +L D     +  LN P G AYE  G S+       + +GIA+RK D  L 
Sbjct: 179 LDLEAGRVDLLLNDTYPTYD-WLNSPAGQAYELKGESVIK----DDVVGIALRKDDTALA 233

Query: 230 EKLDAAITALREKGIYQQIQAKYFKYDV 257
            KL+ A+  +   G Y +I  KYF + +
Sbjct: 234 AKLNGALKEIIANGTYAKINEKYFPFSL 261