Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., L-Arginine ABC transporter, permease protein AotQ (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  234 bits (596), Expect = 1e-66
 Identities = 119/243 (48%), Positives = 166/243 (68%), Gaps = 19/243 (7%)

Query: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63
           L+GY A IL GA LT+E+A+ S+ LA++LG++G   +++P RW   +  LY T+IRGIPD
Sbjct: 2   LKGYGAVILDGAWLTLELALSSMALAIVLGLIGVALRLSPVRWLAWLGDLYATVIRGIPD 61

Query: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123
           LVL++LIF+GGQ LLN                            DY+D++P  AG+ T+G
Sbjct: 62  LVLILLIFYGGQDLLNRVAPMLG-------------------YDDYIDLNPLAAGIGTLG 102

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
           FIFGAY++ETFRGA +A+ KG+ EA  AYGM+    F R+L+PQMIR AIPGF NNWLVL
Sbjct: 103 FIFGAYLSETFRGAFMAIPKGQAEAGMAYGMNGFQVFFRVLVPQMIRLAIPGFTNNWLVL 162

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243
            K TAL+S++GL+DM+  +  AA +T+ PFTF++AVA ++L  TSVS   L+ LE+++S+
Sbjct: 163 TKATALISVVGLQDMMFKAKQAADATREPFTFFLAVAAMYLVITSVSLLALRHLEKRYSV 222

Query: 244 HTR 246
             R
Sbjct: 223 GVR 225