Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., ABC transporter for L-Lysine, permease component 1 (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  221 bits (563), Expect = 1e-62
 Identities = 115/243 (47%), Positives = 163/243 (67%), Gaps = 20/243 (8%)

Query: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63
           LQG+   +++G  +TI+++ LSLLL++LLG+LGA AK++  +  R  A LYTT+IRG+PD
Sbjct: 16  LQGFGPLLMQGTWMTIKLSALSLLLSVLLGLLGASAKLSSVKLLRIPAQLYTTLIRGVPD 75

Query: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123
           LVLM+LIF+                +  WLT+     EW     +Y++I PF AGV+T+G
Sbjct: 76  LVLMLLIFYS---------------LQTWLTSLTDFMEW-----EYIEIDPFGAGVITLG 115

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
           FI+GAY  ETFRGAIL+V +G++EAA AYG+     FR ++ PQM+R A+PG GNNW+V+
Sbjct: 116 FIYGAYFTETFRGAILSVPRGQVEAATAYGLKRGQRFRFVVFPQMMRFALPGIGNNWMVM 175

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243
           LK TALVSIIGL D+V+ +  A  ST   F F +  A+I+L  TS S  +L+ LER+++ 
Sbjct: 176 LKATALVSIIGLADLVKAAQDAGKSTYQLFYFLVLAALIYLLITSASNFILRWLERRYAA 235

Query: 244 HTR 246
             R
Sbjct: 236 GAR 238