Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., amino acid ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

 Score =  220 bits (561), Expect = 2e-62
 Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 20/243 (8%)

Query: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63
           L+G+   +L+G+ +T+++++LSLLL++LLG++GA AK++  +  R  A LYTT+IRG+PD
Sbjct: 16  LKGFGPLLLEGSWMTVKLSILSLLLSVLLGLIGASAKLSSVKLLRIPAQLYTTLIRGVPD 75

Query: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123
           LVLM+LIF+                +  WLT+      W     +Y++I+PF AG++T+G
Sbjct: 76  LVLMLLIFYS---------------LQTWLTSFTEALGW-----EYIEINPFAAGIITLG 115

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
           FI+GAY  ETFRGAILAV +G++EAA AYG+S A  FR ++ PQM+R A+PG GNNW+V+
Sbjct: 116 FIYGAYFTETFRGAILAVPRGQMEAATAYGLSRAQRFRFVVFPQMMRFALPGIGNNWMVI 175

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243
           LK TALVSIIGL D+V+ +  A  S+   F F +  A+I+L  TS S  +L+ LER ++ 
Sbjct: 176 LKATALVSIIGLADLVKAAQDAGKSSYQLFFFLVLAALIYLVITSASNYVLRWLERHYAA 235

Query: 244 HTR 246
            +R
Sbjct: 236 GSR 238