Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  211 bits (537), Expect = 2e-59
 Identities = 109/239 (45%), Positives = 158/239 (66%), Gaps = 20/239 (8%)

Query: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63
           LQGY   +L G  +T++++ LSLL++M LG+LGA AK++P +     AT YTT+IRG+PD
Sbjct: 15  LQGYGPLLLHGTWVTLKLSALSLLVSMALGLLGAAAKLSPLKLLNLPATFYTTLIRGVPD 74

Query: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123
           LVLM+LIF+                +  WL++     +W      Y++I PFVAGV+T+G
Sbjct: 75  LVLMLLIFYS---------------LQGWLSSLTEAMDW-----PYMEIDPFVAGVVTLG 114

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
           FI+GAY  ETFRGAIL+V +G+ EAA ++G++    FR ++ PQM+R A+P  GNNWLVL
Sbjct: 115 FIYGAYFTETFRGAILSVPRGQQEAAASFGLNRWQRFRFVVFPQMMRFALPSLGNNWLVL 174

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFS 242
           LK TALVSIIGL D+V+++  A  ST     F +    ++L  TS S  +L++LER+++
Sbjct: 175 LKATALVSIIGLSDLVKVAQEAGKSTFNMLDFLLLAGALYLLITSASNYVLRVLERRYN 233