Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., amino acid ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  113 bits (282), Expect = 4e-30
 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 32/230 (13%)

Query: 11  ILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDLVLMMLI 70
           IL G  +T+ V   ++LL  +LG+   L KM+   + R  A LY  +IRG P +V ++++
Sbjct: 24  ILNGLKVTLIVTFFAMLLGAVLGVGTTLMKMSSKWYIRFPAELYVGVIRGTPVVVQLVIL 83

Query: 71  FFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIGFIFGAYM 130
           +F   I+L                               +D+    A ++  G   GAY+
Sbjct: 84  YF---IVLAA-----------------------------LDVDKITAAIIAFGLNSGAYI 111

Query: 131 AETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLKTTALV 190
           +E  R  I AVDKG+ EAA++ G+S AM+ + I+LPQ I++ +P  GN ++VLLK TA++
Sbjct: 112 SEIIRAGIQAVDKGQTEAARSLGLSQAMTMKLIILPQAIKNILPALGNEFIVLLKETAVI 171

Query: 191 SIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERK 240
             IG  D++R   +    T          A+I+LF T   T +L   E++
Sbjct: 172 GFIGGVDLMRAGEIIRSRTFEDSVPLFTCALIYLFLTYSFTFMLSKFEKR 221