Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  109 bits (273), Expect = 6e-29
 Identities = 70/238 (29%), Positives = 127/238 (53%), Gaps = 26/238 (10%)

Query: 7   YEAS----ILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIP 62
           YE S    +L+G  +T+EV++L++++ ++LG++  LA+++     R +A  Y  IIRG P
Sbjct: 119 YEVSKPGILLEGLWITLEVSMLAIIIGIVLGVVTGLARISVNPALRWLAITYIEIIRGSP 178

Query: 63  DLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTI 122
            LV + L +F    LLN        F    L+A                I P   GV+ +
Sbjct: 179 LLVQVFLWYFVVGTLLNA------LFEKVGLSA----------------IPPLWYGVMAL 216

Query: 123 GFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLV 182
               GAY+AE  R  I +V +G++EAA++ GMS A S R+++LPQ  R  +P     ++ 
Sbjct: 217 AIFTGAYVAEIVRAGIQSVHRGQMEAARSLGMSYAQSMRKVILPQAFRRIMPPLAGQFIS 276

Query: 183 LLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERK 240
           L+K ++L+ +I + ++ + +     ++  PF  ++  A+++L  T   +  ++ LER+
Sbjct: 277 LVKDSSLLGVIAVRELTKATREVVTTSLQPFELWIVCALLYLVLTFTLSLCVQYLERR 334