Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., L-Arginine ABC transporter, permease protein AotM (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  259 bits (661), Expect = 4e-74
 Identities = 129/227 (56%), Positives = 177/227 (77%), Gaps = 4/227 (1%)

Query: 2   DFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLR 61
           D+++I ++LP+Y SGL TT+ L++LSL  GLL A+PL + R SKQ   ++ AW Y Y +R
Sbjct: 4   DYNVIYEALPLYFSGLLTTLKLLALSLFFGLLAALPLGLMRVSKQPIVNMTAWLYTYVIR 63

Query: 62  GTPLLVQLYLIYYGMDQWFPVKDT-LW---EHAWFCALVAFILNTSAYTAEIIRGAINGL 117
           GTP+LVQL+LIYYG+ Q+  V+++ LW     A FCA +AF +NTSAYTAEII G++   
Sbjct: 64  GTPMLVQLFLIYYGLAQFAIVRESFLWPWLSSATFCACLAFAINTSAYTAEIIAGSLRAT 123

Query: 118 PKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGA 177
             GE+EAAKA GMSR++ Y+RI+LPSALRR+LP YSNEVI ML  +++A IVT++D+TGA
Sbjct: 124 SNGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGA 183

Query: 178 ARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPR 224
           AR VN++YY PFEA+++AG+FY+ LTFI++  FK AE+R+L YL PR
Sbjct: 184 ARTVNAQYYLPFEAYITAGVFYLCLTFILVRLFKLAERRWLGYLAPR 230