Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., Cystine ABC transporter, permease protein from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (336), Expect = 2e-36
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 5   LIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRGTP 64
           L +DS P  L G + TV+L    +  GLL    LA+ R S+ K  +  A  Y+ F RGTP
Sbjct: 7   LALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRFKLVNWIARIYVSFFRGTP 66

Query: 65  LLVQLYLIYYGMDQWFPVKDTLWEHAWFCALVAFILNTSAYTAEIIRGAINGLPKGEVEA 124
           LLVQL++IYYG+ Q     D L       AL+ F LN +AY  EI+R AI+ + +G+ EA
Sbjct: 67  LLVQLFVIYYGLPQLGIELDPLP-----AALIGFSLNMAAYACEILRAAISSIERGQWEA 121

Query: 125 AKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLVNSR 184
           A + GM+R QT +R ILP A R +LP   N  I ++  +A+A  + + +L   A+L+ +R
Sbjct: 122 AASIGMTRAQTLRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITAR 181

Query: 185 YYAPFEAFLSAGLFYMALTFII 206
            +  F  +L+A L Y  L  ++
Sbjct: 182 TFEIFTMYLAAALIYWVLATVL 203