Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  205 bits (522), Expect = 5e-58
 Identities = 107/219 (48%), Positives = 149/219 (68%), Gaps = 4/219 (1%)

Query: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFL 60
           M + + I  LP ++ G W T+ LV +S++ GL+ A+PL IAR+S+        +GYI+F 
Sbjct: 1   MTWEIFIKWLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFF 60

Query: 61  RGTPLLVQLYLIYYGMDQWFPVKDT-LWEHA---WFCALVAFILNTSAYTAEIIRGAING 116
           RGTPLLVQL+L+YYGM Q+  V+ + LW +    ++CA++   L+T+AY AEIIRGAI  
Sbjct: 61  RGTPLLVQLFLVYYGMAQFDVVRQSALWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQN 120

Query: 117 LPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTG 176
           +P GE+EAA+A GMSR Q    IILP A R  LPAYSNEVI ML  SA+A  +T+++LTG
Sbjct: 121 VPHGEIEAARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTG 180

Query: 177 AARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQ 215
            AR + +R Y   E FL+AGL Y+ + FI++  FK  E+
Sbjct: 181 MARKIAARTYLHEEMFLTAGLIYLLIAFILMQGFKLLER 219