Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., L-lysine ABC transporter, permease component 2 (from data) from Sinorhizobium meliloti 1021

 Score =  163 bits (412), Expect = 3e-45
 Identities = 87/217 (40%), Positives = 133/217 (61%), Gaps = 6/217 (2%)

Query: 11  PIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRGTPLLVQLY 70
           P +LSGL  T+ LV  S+++G + ++P+A+ R SK + +   A+ Y+YF RGTPL+ QL+
Sbjct: 60  PSFLSGLGVTLTLVISSILMGAVLSLPVALGRMSKNRLWGWLAYAYVYFFRGTPLITQLF 119

Query: 71  LIYYGMDQWFPVKDT--LW---EHAWFCALVAFILNTSAYTAEIIRGAINGLPKGEVEAA 125
           LIYYG+  + P  +T  LW     AW CAL  F LNT+AY AEI+RGAI  +P+G+ E A
Sbjct: 120 LIYYGLGSFRPQLETVGLWWFFRDAWNCALFTFTLNTAAYQAEILRGAIESVPRGQREGA 179

Query: 126 KAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLVNSRY 185
            A G+     + ++ILP A+  +L  Y NE+I M+ GSA+  IVT+ DL G  R   SR 
Sbjct: 180 AALGLPERVAFFKVILPQAMIVALRPYGNEIILMIKGSAIVAIVTVFDLMGETRRAFSRT 239

Query: 186 YAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLK 222
           +  ++ ++ A + Y+ +  ++   +   E R   +LK
Sbjct: 240 F-DYQMYIWAAILYLLMVELLRNIWGWLEARLTRHLK 275