Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  192 bits (489), Expect = 4e-54
 Identities = 100/227 (44%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 1   MDFSLIIDSLP-IYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYF 59
           M+  L+   LP +   GL  T+ LV+L++ IG+  AIP A+ R           + +I+F
Sbjct: 1   MNLDLVATFLPKLLFEGLPVTLKLVTLAVAIGVFIAIPTALLRVHPSPLVRAFPYAFIFF 60

Query: 60  LRGTPLLVQLYLIYYGMDQ--WFPVKDTLW---EHAWFCALVAFILNTSAYTAEIIRGAI 114
            RGTPLL+Q+ L+YYG+    W    + LW      ++CAL+AF LNT AY+AEI+RGAI
Sbjct: 61  FRGTPLLIQIALVYYGLSTLPWIRENEVLWPILREPFWCALIAFALNTGAYSAEILRGAI 120

Query: 115 NGLPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDL 174
             +P+GEVEAA+AYGM      +RIILP A +  LPAY NE+I +L GSA+A  +T++D+
Sbjct: 121 QAIPRGEVEAARAYGMRGLLIVRRIILPRAFQIGLPAYGNEIILILKGSALASSITLLDI 180

Query: 175 TGAARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYL 221
           TG ARL+ +RYY P EAF++AG+ Y+ L +++    +  E+R   +L
Sbjct: 181 TGVARLLYARYYTPVEAFVTAGVIYLILVYLLTRGLRLIERRLSRHL 227