Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., polar amino acid ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  127 bits (319), Expect = 2e-34
 Identities = 69/205 (33%), Positives = 115/205 (56%), Gaps = 5/205 (2%)

Query: 2   DFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLR 61
           DF    D   + + G+ TT+ L+++  V+G+   I  A AR     W      GY+  +R
Sbjct: 6   DFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGYVEIIR 65

Query: 62  GTPLLVQLYLIYYGMDQWFPVKDTLWEHAWFCALVAFILNTSAYTAEIIRGAINGLPKGE 121
            TP LVQL+ I++G+    P  D         A+VA ++N  AY+ EIIR  +  +P+G+
Sbjct: 66  NTPFLVQLFFIFFGL----PSLDIHISEIT-AAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120

Query: 122 VEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLV 181
           +EAA++  MSR Q ++ IIL  AL++  PA S++V+ ++ GSAV   + + +L+ AA  +
Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180

Query: 182 NSRYYAPFEAFLSAGLFYMALTFII 206
             R +  FEA++ A   Y+ L  ++
Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILL 205