Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  209 bits (533), Expect = 2e-58
 Identities = 124/332 (37%), Positives = 185/332 (55%), Gaps = 2/332 (0%)

Query: 372 MAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIGQLAQGFNLFMDKLQPIIRRVV 431
           +A   + P++ +AE+ + +  G+  + Q +     DE GQ+A    +   +   ++ R+ 
Sbjct: 193 LAYLALAPLQQLAEQARQV--GDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIG 250

Query: 432 DNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAAS 491
           D + Q+     ++   ++S+ +S+  Q  E D VATA  +M  +   V  NAQR   AAS
Sbjct: 251 DASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAAS 310

Query: 492 DAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGIIEILSVIEGISEQTNL 551
            A     TG EV+  +   + QL   +  A  V+ EL  ++  I ++L VI GI+EQTNL
Sbjct: 311 RADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNL 370

Query: 552 LALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVINKVELGTQDVVKAIQG 611
           LALNAAIEAARAGEQGRGFAVVADEVR+LASRTQ S  EI  +I  ++ G +  V+ +Q 
Sbjct: 371 LALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQR 430

Query: 612 SNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDL 671
           S E A  + E  A A   L+ + S +  I+EMS QI  A + Q  VS  + Q++V+IR  
Sbjct: 431 SREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGG 490

Query: 672 SAQILSETEASEKVGEQIARLSFEQQTLVGQF 703
           S   ++    S +    +A L+   + LV QF
Sbjct: 491 SDHHVANGLRSRQSASGVAELANSMEVLVQQF 522