Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  277 bits (708), Expect = 1e-78
 Identities = 189/719 (26%), Positives = 361/719 (50%), Gaps = 30/719 (4%)

Query: 1   MRQISVQWKITLLAGLCLVFTSLALIGFSIYNARASQQTAKL--QSSESVIDKSQQLLQT 58
           M+ +S+  K+  +    L    +A++ FS++ +  S + A+L  Q   ++ D+++Q L  
Sbjct: 1   MKHLSISTKLLWITS-ALFLIIVAILSFSLWWS-LSDKNAQLAGQVQGALHDETRQRLSA 58

Query: 59  GALLNATEISEYLSEAIYRAEMLAANALFLKNNSEENFGESEVLRTSLDEMVRKSVLGFD 118
            A      ++ +++EA YR     A  +      E++     + R  ++E V   +    
Sbjct: 59  RAGEYGERVAGFINEA-YRIPFSFAGMI------EQSAASQPLSREGVEESVAGVLRKNS 111

Query: 119 TIEGAYLVFRPNMLDSEDSNYVNADYVGSNDIGQFAAYWTKAANGQNVISRVLTQAQLTE 178
            +   Y  F PN  D  D +Y         ++G    Y+T++ +G     +V   ++  +
Sbjct: 112 QLSSMYAQFEPNGYDGRDGDYTQKISHSVPEVGTLEIYYTRSDDGSVEHQQVDDASEKYD 171

Query: 179 ESNKER-------FVCPIEQASPCITSPRMVEFETGRY-LATSLSVPILIDGVAIGFYGI 230
            + KE        ++C  +   PC+  P + E   G   L TSL+VP+++ G   G  G+
Sbjct: 172 ATLKEFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGV 231

Query: 231 DLTLAPLIGITQKSDNNLFDGQGKVSIVSENNALVAS---DAAFLTLGETFQSENLSRST 287
           D+ L     +  +   +L+ G+ KV+++S+   +VA+   D     LGE+  + +L+   
Sbjct: 232 DVNLPVFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESI-APSLASQL 290

Query: 288 VSSLLQAGQVNTQWSEDGQWLVVFAPIKV--ANQNWGIIFEMPRQSVMQDAEQLDILLTE 345
                Q G +     E G  ++V  PI++  A   W ++ E+ +    Q A  +D  ++ 
Sbjct: 291 TGLHRQGGYL-----EQGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKAMSA 345

Query: 346 QLERGIRSELMVGTLMVVVGLLVVTLMAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNS 405
                    L+VG ++ ++ ++ ++L+   +V P++ +  R+++++S EGDLTQ++ V S
Sbjct: 346 MASSLGSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVES 405

Query: 406 ADEIGQLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSV 465
             E+  L  G N F++KL+ +I  + +   +  + ++      + T  S   Q+ +++SV
Sbjct: 406 HAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESV 465

Query: 466 ATAAEEMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVV 525
            TA  EM+ T+  V + +++  +         + G++ +  +   +  +     LA   V
Sbjct: 466 VTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAV 525

Query: 526 EELARNNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 585
            ++A ++T I +IL VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LAS+TQ
Sbjct: 526 GKVAESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQ 585

Query: 586 ASVGEIRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSH 645
           +S  EI  +I  ++       + I    + AQ    Q   A++ LN + + I  ++    
Sbjct: 586 SSTDEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVT 645

Query: 646 QIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFK 704
            I  AA++Q  V+ +V++++  I D ++++    + +++    +A L  +Q   +G+ K
Sbjct: 646 HIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704