Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  213 bits (543), Expect = 2e-59
 Identities = 119/347 (34%), Positives = 203/347 (58%), Gaps = 2/347 (0%)

Query: 361 MVVVGLLVVTLMAMRLVRPIRAVAERLQDISS--GEGDLTQRLQVNSADEIGQLAQGFNL 418
           +V++ ++V  L+++ ++RP++   +++ +  +    G+LT +L  +  DE  +L++  N 
Sbjct: 328 LVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNR 387

Query: 419 FMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQTSAH 478
            +D L+ +I+ ++D + Q+ +  E+  +    T    + Q  +VD VATA  +++ ++  
Sbjct: 388 LVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQ 447

Query: 479 VVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGIIEI 538
           V  +A  A+N    A   AQ    +   ++  +  L D +  A  V+ ++  ++  I  I
Sbjct: 448 VSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSI 507

Query: 539 LSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVINKV 598
           L VI GI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ S  EI+ +I  +
Sbjct: 508 LDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVL 567

Query: 599 ELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQAAQDQQTVS 658
           + GTQ+ V  ++   + A +  E+   A   L  + +A+H  ++    I  AAQ+Q  VS
Sbjct: 568 QQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVS 627

Query: 659 AQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFKV 705
            QV++ + +I  +S +  +  + + +   Q+A+L+ E Q  VG+FKV
Sbjct: 628 QQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFKV 674



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 72/369 (19%)

Query: 356 MVGTLMVVVGLLVVTLMAMRLVRP-IRAVAERLQDIS----SGEGDLTQRLQVNSAD--- 407
           ++G   VV  LL+V  +A  +    I++    LQD+S         LTQ L +       
Sbjct: 9   VIGGFSVVTLLLIVLGVASLVTNDNIKSSTLVLQDLSLPALKSSNGLTQNLALQEKQLLV 68

Query: 408 ---------------EIGQLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTR 452
                          +   L++GF   +D+L  II+   DN G       Q+KS   + +
Sbjct: 69  AFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLG------GQIKSLRANYQ 122

Query: 453 RSSEAQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMN 512
             ++   K    +  A E+  QT   +V+N +    AA D              +   + 
Sbjct: 123 SFNDNSLK----MMQAREQSLQTQESLVDNLESLEGAADD--------------TASLLL 164

Query: 513 QLVDRMNLAVPVVEELARNNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAV 572
            L+D      P   E+A   + I    S +           + ++ +   A E+ + +  
Sbjct: 165 DLIDLETSQDPTEREIAATASNIDNSFSNL-----------ITSSYDLVNAKEKSK-YET 212

Query: 573 VADEVRSLASRTQASVGEIRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNR 632
           +  E+  + S  Q          NK+E  ++     I    E       + +   T LN 
Sbjct: 213 ILKELDYIISEAQ----------NKLEYVSRHWEGVI--DQEALDNINTEASKVFTMLNG 260

Query: 633 VFSAIHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEA-SEKVGEQIAR 691
             S +    +     +QA+Q   TV +  T    ++  L+  I S ++A S K  ++I  
Sbjct: 261 PDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSMGSLNKAIESTSQAVSVKAIDEIDS 320

Query: 692 LSFEQQTLV 700
            S++   LV
Sbjct: 321 ASYKTLALV 329