Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  257 bits (657), Expect = 1e-72
 Identities = 155/450 (34%), Positives = 245/450 (54%), Gaps = 14/450 (3%)

Query: 259 SENNALVASDAAFLTLGETFQSENLSRSTVSSLLQAGQVNTQWSEDGQWLVVF--APIKV 316
           +E   L+  D  F+  G TF ++  + S ++ ++Q  +V      DG+   ++       
Sbjct: 196 AEITLLLPKDGNFVPFGGTFTTDTSASSELNKVMQGTEVIRTIDLDGKSYALYRHGMQDY 255

Query: 317 ANQNWGIIFEMPRQSVMQDAEQLDILLTEQLERGIRSEL-MVGTLMVVVGLLVVTLMAMR 375
           + + +G++              LD   +EQ    IR +L M+G +  ++G  +   +A  
Sbjct: 256 SGKTFGVL-----------DIALDRSHSEQAMSDIRFKLIMIGFIAFLIGTAIAWFIAKS 304

Query: 376 LVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIGQLAQGFNLFMDKLQPIIRRVVDNTG 435
           + RPI      L DI+ GEGDLT+R++V S DEI QLA  FN F +K+   + +V D+T 
Sbjct: 305 ITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTS 364

Query: 436 QVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAASDAQR 495
            + ++ E++ +    T++ ++ Q  E + VATA  EM  T   V  NA  A +AA+ A  
Sbjct: 365 LLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASE 424

Query: 496 AAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGIIEILSVIEGISEQTNLLALN 555
           + + G  ++      ++ L D +  A   + EL RN   I  +L VI  I++QTNLLALN
Sbjct: 425 STEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALN 484

Query: 556 AAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVINKVELGTQDVVKAIQGSNET 615
           AAIEAARAGEQGRGFAVVADEVR+LASRTQAS  EI+ +I  ++   +  V  +  S  T
Sbjct: 485 AAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTAT 544

Query: 616 AQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQI 675
            Q     V +A   L  +  A+  I++M+ QI  AA +Q  VSA++ ++V NI D++   
Sbjct: 545 TQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINA 604

Query: 676 LSETEASEKVGEQIARLSFEQQTLVGQFKV 705
                 + + G+++A+LS    TL+ QF++
Sbjct: 605 TESAVQTARAGDELAQLSMRLTTLLAQFRI 634