Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (601), Expect = 3e-66
 Identities = 160/497 (32%), Positives = 265/497 (53%), Gaps = 22/497 (4%)

Query: 213 SLSVPILIDGVAIGFYGIDLTLAPLIGITQKSDNNLFDGQGKVSIVSENNALVASDAAFL 272
           +++ P+++ G   G    +LT+  L    Q+ +     G+G   +V     +++     L
Sbjct: 152 TIAEPVMVSGRLFGVAAANLTIDQLTDAVQRLE---VPGKGYTLMVDTAGLIISHPNTQL 208

Query: 273 TLGETFQSENLSRSTVSSLLQAGQVNTQWSED---GQWLVVFAPIKVANQNWGIIFEMPR 329
              +  + +  S  T S L Q    NT    +   G  LV  A   V + +W +IF M +
Sbjct: 209 NNQQLTKID--SHFTPSWLSQRANANTMEERELDGGTQLVYVAA--VPSTDWALIFVMNK 264

Query: 330 QSVMQDAEQLDILLTEQLERGIRSELMVGTLMVVVGLLVVTLMAMRLVRPIRAVAERLQD 389
           Q +M  A  L   +         S + VG L+V+ GL++V +  M+  + +  VA  L D
Sbjct: 265 QEIMSQATSLAWWM---------SAVGVG-LLVIFGLVLVAIFKMQF-KDLERVALALND 313

Query: 390 ISSGEGDLTQRLQV-NSADEIGQLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTV 448
           I+ G+GDLT R+   NS DEIG LA GFN F+++L  +I R+ +  GQ+    +   ++ 
Sbjct: 314 IAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASA 373

Query: 449 ESTRRSSEAQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQ 508
               +  E Q  EV  VATA  EM   +  +  NA+     A +A   +  G + +  SQ
Sbjct: 374 ADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQ 433

Query: 509 MQMNQLVDRMNLAVPVVEELARNNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGR 568
             +  L + ++ A  ++ EL  ++  I  IL  I GI+EQTNLLALNAAIEAARAGEQGR
Sbjct: 434 QSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGR 493

Query: 569 GFAVVADEVRSLASRTQASVGEIRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVT 628
           GFAVVADEVR L+ RT +S  EI+++I  ++      VK++  S++ A+ +      A  
Sbjct: 494 GFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASE 553

Query: 629 QLNRVFSAIHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQ 688
            L ++  AI+ I++M+ QI  AA++Q +V++++ ++  +IR++S  +  E +++    ++
Sbjct: 554 SLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQE 613

Query: 689 IARLSFEQQTLVGQFKV 705
           +A L+   Q  V +FK+
Sbjct: 614 LAHLAASLQQEVSRFKL 630