Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase DinG from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 4e-54
 Identities = 183/689 (26%), Positives = 308/689 (44%), Gaps = 95/689 (13%)

Query: 16  NLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLMAVIPVAV 75
           +L   ++ +  R  Q  +   +++TL     +    LV EAGTG+GK+ +YL+     A+
Sbjct: 18  SLSRHIKGYSCRVQQQTMATRVSETL-----QKGDNLVVEAGTGVGKTYAYLVP----AL 68

Query: 76  VNKRKVVISTATVALQEQLLNKDLPLYRRISDQNFSFILAKGRQRYCCS---ERLAAACG 132
           ++ ++V++ST +  LQEQL  KDLP    I        L KGR  Y C    E+  +   
Sbjct: 69  LSGKQVIVSTGSKNLQEQLFFKDLPALLNILGIRPKVALLKGRSNYLCQYLMEKQLSGVE 128

Query: 133 IDDGQIALFESKPKPHETELLAELHTALSQGKW-----DGDRDG-WPSPISDELWSVIVS 186
           ++DG+I                 L   L   +W     DGD    +  P +     ++VS
Sbjct: 129 VNDGKI-----------------LDDLLRIDQWASQTVDGDIGSLYAVPENSPAIPLVVS 171

Query: 187 DKHSCNGSFSVH-RHCPFQKARSELDKADVIIANHSLVMADADL-GGGVILPAPEETIYV 244
            K SC G    H   C  +KAR++   A +I+ NH L  AD  L   G     P+  + +
Sbjct: 172 SKESCIGKACDHYEACFTRKARAKALDAKIIVVNHHLFFADRILKETGFAELLPDSDVVI 231

Query: 245 FDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDEKRAERFAEEARTAIQY 304
           FDEAH LP +A  +     ++K     LE+ N+     T + D  +         T + +
Sbjct: 232 FDEAHLLPDIAVTYFGQQLSIKSLIRLLERFNELYR--TQMADSPQIGAMTARCHTQLLH 289

Query: 305 LIPTLNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSSQKAMQSVSKVADLIAE 364
               L                +  E  +  + + D  +AL ++S   +  ++    ++  
Sbjct: 290 WQGLL----------------FATEERDWRRLIGD--KALMEASWALVSELTAYRTMLLG 331

Query: 365 KVKEGEL---ATRIAEPALGELGFYVQRLENLTQVWQLMAKPNKDKGAPLARWLEVSPER 421
            +   E         +  L +L  ++Q  +N    + +      D G      L +SP +
Sbjct: 332 YLGRNEAFDDGVEKIDGLLSKLTVFIQ-CDNPDSAYSI------DYGYQHLT-LRISPIK 383

Query: 422 EGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQAGISDKAEDGVQF 481
                 S+   ++ W             I  SATL+       F +  G+ +KA   +  
Sbjct: 384 VAKECQSLFSPDVSW-------------IFTSATLQINRDLSLFTKAMGL-EKANTSI-- 427

Query: 482 LALASPFDYPTQGELLIPK-MEMEPQAEGYTAYLAKKVLCYLQADKA-NLVLFASYWQMR 539
             L SPFDY  Q    +P+ +      E     L +  +  + A K    +LF S+  + 
Sbjct: 428 --LDSPFDYRRQSLFCVPRHLASVTSQERAARQLVEVAVKAINAAKGRTFMLFTSHRMLN 485

Query: 540 EVAESLKVEFTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGEL 599
            VA  L+    +  + L VQG+  +  +L K+++L      +VL GTG+F EG+D+ G+L
Sbjct: 486 LVAVMLQ---GRIDYPLLVQGQAGKQTLLKKYRQL----GNAVLLGTGAFWEGVDVRGKL 538

Query: 600 LENLIITKIPFAVPTSPVEQAHAEYIQELGGNPFMQITVPEASKKLIQSVGRLLRKERDS 659
           L  +II K+PF  P   + +A A+ +Q  G +PFM +++P+A   L Q VGRL+R E+D 
Sbjct: 539 LSCVIIDKLPFVSPDDNLYKARADGVQREGKDPFMTLSLPQAVIALNQGVGRLIRDEKDR 598

Query: 660 GRVVILDRRVVSKRYGKALLDALPPFKRT 688
           G +++ D R+V++ YG+A +++LPP  RT
Sbjct: 599 GVLILCDNRIVNRPYGQAFINSLPPMHRT 627