Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase DinG from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., ATP-dependent helicase, DinG family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (582), Expect = 5e-64
 Identities = 201/684 (29%), Positives = 318/684 (46%), Gaps = 87/684 (12%)

Query: 17  LQNQLENFIPRRAQNFLVAEMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLMAVIPVAVV 76
           L   ++ F  R++Q     +MA+ +  A   S    V EAGTG+GK+ +YL+     A++
Sbjct: 11  LAKHIQGFSARQSQ----VQMAQIISNAI-ASKGNAVIEAGTGVGKTFAYLIP----AML 61

Query: 77  NKRKVVISTATVALQEQLLNKDLPLYRRISDQNFSFILAKGRQRYCCSERLAAACGIDDG 136
           + ++V++ST +  LQEQL  KDLP    +        L KGR  Y C  RL       D 
Sbjct: 62  SGKQVIVSTGSKNLQEQLFLKDLPALTAMLGIAPKLALLKGRNNYLCQYRL-------DR 114

Query: 137 QIALFESKPKPHETELLAELHTALSQGKW-----DGDRDGWPSPISDE-LWSVIVSDKHS 190
           Q+     +    E  LL +L   L   +W     DGD  G  S   +     ++VS K +
Sbjct: 115 QM----QEASHIEARLLDDL---LKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKET 167

Query: 191 CNGS-FSVHRHCPFQKARSELDKADVIIANHSLVMADA---DLGGGVILPAPEETIYVFD 246
           C G     +  C  +KARS    A +I+ NH L  AD+   D G   +LP P+  + +FD
Sbjct: 168 CLGQRCEFYDACFTRKARSRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPD--VVIFD 225

Query: 247 EAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDEKRAERFAEEARTAIQYLI 306
           EAH LP +   +    ++ +    +L+KL Q     T L D  +  +F +     +    
Sbjct: 226 EAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQ--TELSDTGQIAQFCQRCLAKLS--- 280

Query: 307 PTLNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSSQKAMQSVSKVADLIAEKV 366
                         +  G++     +    L ++S AL+  S   +  ++ +  L+   V
Sbjct: 281 -------------DWHNGLFSIAESDWRVLLGNKSIALA--SWDLLAELTALQKLLLAHV 325

Query: 367 KEGELATRIAEPALGELGFYVQRLENLTQVWQLMAKPNKDKGAPLARWLEVSPEREGDYL 426
              EL   IA   L EL     +L +  Q     A  + + G+                +
Sbjct: 326 GRSELLDDIAVK-LAELN---HKLNHFFQCDNPQAAYSVEFGSRFV-------------M 368

Query: 427 VSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQAGISDKAEDGVQFLALAS 486
           + +SP+ I  +  QQL+      I  SATL+   S   F ++ GISD          L S
Sbjct: 369 LRISPINIAREC-QQLFVANTSWIFTSATLQVNRSLAHFAKELGISDAKAH-----ILDS 422

Query: 487 PFDYPTQGELLIPKM--EMEPQAEGYTAYLAKKVLCYLQADKANLVLFASYWQMREVAES 544
           PFDYP Q    +P+    +  Q +     +   V     A     +LF S+  + + A +
Sbjct: 423 PFDYPRQALFCVPRQLGNVANQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALA 482

Query: 545 LKVEFTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGELLENLI 604
           L+   T+  + L VQG+  +  +L K ++L      +VL GT SF EG+D+ G+LL  +I
Sbjct: 483 LR---TRTQYPLLVQGQAGKQSLLTKFRQL----GNAVLLGTSSFWEGVDVRGKLLSCVI 535

Query: 605 ITKIPFAVPTSPVEQAHAEYIQELGGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVI 664
           I K+PF  P  P+ +A A+ I   GG+PF Q+++P+A   L Q VGRL+R E+D G +++
Sbjct: 536 IDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLIL 595

Query: 665 LDRRVVSKRYGKALLDALPPFKRT 688
            D R+V++ YG+A L++LPP  RT
Sbjct: 596 CDNRIVNRAYGQAFLNSLPPMART 619