Pairwise Alignments

Query, 368 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., porin (RefSeq) from Shewanella loihica PV-4

 Score = 61.6 bits (148), Expect = 3e-14
 Identities = 93/338 (27%), Positives = 128/338 (37%), Gaps = 72/338 (21%)

Query: 27  KTLLALAVLAAA-GSVNAAEILKSDAGTVDFYGQLRTELKFLE---DKDPTIGSGSSRAG 82
           KTLLA A+  A   S +AAE L         YG+L    +  +   D   TI S +SR G
Sbjct: 7   KTLLASALATATLASAHAAEPLT-------VYGKLNVTAQSNDVDGDATTTIQSNASRFG 59

Query: 83  VDANYTVNDSLALQGKVEFALKDSGD-----MYVRNHILGVKTNFGKFSFGKQWTTSDDV 137
           V   + ++ SL     VE+ + D+GD        RN  +G+K NFG FS G+  T     
Sbjct: 60  VKGAFELSSSLEAFYTVEYEV-DTGDAAKENFLARNQFVGLKGNFGAFSVGRNDTMLKQS 118

Query: 138 YG---------ADYSYFFGGTG-----LRYGTLSDALHDSQVKYV-------YEADSFWV 176
            G          D  + F G         Y T S +     V Y        Y  D F V
Sbjct: 119 QGKVDQFNDLSGDLKHLFKGENRIEQTATYMTPSFSGFKVGVTYAAEGASSQYGQDGFSV 178

Query: 177 KAGYG--------------FPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSN 222
            A YG              +  D    E+    V      L +  G  Q +++ +K    
Sbjct: 179 AAMYGDAKLKKSPIFASIAYDSDVKGYEVVRATVQGKIAGLKI-GGMYQQQEETYKKDGT 237

Query: 223 TVGTTTTDIKADVTNSYFEVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTY 282
            V      + AD    Y  V+  YTI   ++   Y     D+E+       D+ SV G Y
Sbjct: 238 AV------VGADSKTGYL-VSAAYTIDAVVLKAQYQ----DMEDK-----GDSWSVGGDY 281

Query: 283 KVADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKF 320
           K+   TKL+A Y         G D       LG+E+KF
Sbjct: 282 KLGKPTKLFAFY---TNRDFEGVDTTDKFFGLGLEHKF 316