Pairwise Alignments

Query, 459 a.a., cysteine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Cysteinyl-tRNA synthetase (EC 6.1.1.16) from Pseudomonas fluorescens FW300-N2E2

 Score =  265 bits (678), Expect = 2e-75
 Identities = 177/470 (37%), Positives = 248/470 (52%), Gaps = 39/470 (8%)

Query: 2   LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYDL 61
           ++++N+L R    F PIV   VG+Y CG T+Y   HIG+ RT++  DV+A+ LR+ G  +
Sbjct: 1   MELFNTLGRAVVPFIPIVENHVGLYACGPTVYHYAHIGNMRTYIFEDVLAKTLRHRGLVV 60

Query: 62  TFVRNITDID----------DKIIKRAAENAETCESLTERLIQEMYADFDALNIKRPDVE 111
             V NITD+           DK++  AA   +T   + +   +  +     LNI RPDV 
Sbjct: 61  KHVMNITDVGHLQSDADAGHDKLMVGAARENKTPWQVAQFYEEAFFRHCGLLNITRPDVV 120

Query: 112 PRATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDI 171
            RAT +I EII L+ERL+E+G AY +  G+V F V ++  Y +L +  LD+ +A  RV  
Sbjct: 121 CRATQHIPEIITLIERLLEKGVAYESA-GNVYFSVEKFPAYHELGQLVLDEQRATERVSH 179

Query: 172 EAAKRSPLDFVLWKMSK--PGE-PTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGS 228
           +  KRS  DF LW  +   PG+   WESPWG G PGWHIECSAM S  LG   DIH GG 
Sbjct: 180 DPLKRSQADFALWFSTSKFPGQIMKWESPWGLGFPGWHIECSAMASKYLGERVDIHCGGI 239

Query: 229 DLQFPHHENEIAQSCCAHDTQYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLGH-YDAE 287
           D    HH NEIAQS C    ++VN W H   + VD EKMSKS G F T+  ++   YD  
Sbjct: 240 DHINVHHSNEIAQSECCFGHRWVNYWFHCEFLNVDTEKMSKSSGEFLTVDSLVDKGYDPC 299

Query: 288 TVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALR-GLDRSVPAAGGEEY-------V 339
             R  ++  HYRS L +S E L+    +L++    +   LD S  ++ GE +        
Sbjct: 300 AFRLLVLGSHYRSALAFSWEALDDVATALQKARRRISIALDNS--SSPGEAFSAMHAASY 357

Query: 340 TRFTAAMNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPE 399
            RF AA+  D +TP A      MA     +K+ ++T    +  L+R    V+ I   + +
Sbjct: 358 RRFFAALEKDLHTPSA------MAEFWWVIKTNELTEPERI-DLLRSFNAVLDIGLFDTQ 410

Query: 400 AFFQGSAEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED 449
           A    S + +       LI  RN +R  ++WA +D  RD L   GI L D
Sbjct: 411 ATRLTSEQSD-------LIAARNVARNERNWAESDRIRDLLLAQGISLSD 453