Pairwise Alignments

Query, 459 a.a., cysteine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., cysteinyl-tRNA synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  347 bits (890), Expect = e-100
 Identities = 197/449 (43%), Positives = 266/449 (59%), Gaps = 27/449 (6%)

Query: 2   LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLR--YLGY 59
           LK+ N+ TR+KE F PI    V MYVCG T+YD  H+G+ R  V FD++ R LR  Y   
Sbjct: 6   LKLTNTKTRRKEVFTPIDPDNVRMYVCGPTVYDRAHLGNARPAVVFDMLFRVLREVYGPE 65

Query: 60  DLTFVRNITDIDDKIIKRAAENAETCESLTERLIQEMYADFDALNIKRPDVEPRATAYIE 119
            +T+VRNITD+DDKI  RAAE   +   +T+        D  AL    P   PRAT YI 
Sbjct: 66  HVTYVRNITDVDDKINARAAETGRSIREITDETTGWYLEDMAALGTLPPTHVPRATEYIP 125

Query: 120 EIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPL 179
           +++A++E LI RG AYVA+ G V+F+V  Y  YG LS + +D + AGARV++   KR P+
Sbjct: 126 QMVAMIETLIARGHAYVAE-GHVLFDVRSYGAYGALSGRSVDDMIAGARVEVAPYKRDPM 184

Query: 180 DFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFPHHENEI 239
           DFVLWK S+ G P W+SPWG GRPGWHIECSAM+  +LG  FDIHGGG+DLQFPHHENEI
Sbjct: 185 DFVLWKPSEAGLPGWDSPWGRGRPGWHIECSAMSHELLGESFDIHGGGNDLQFPHHENEI 244

Query: 240 AQSCCAH-DTQYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLGH-YDAETVRYFLMSGH 297
           AQSCCAH +  +   WMH+ M+ V+ +KMSKSLGNFFT+RD+L      E +R+  +  H
Sbjct: 245 AQSCCAHPEGGFAKVWMHNEMLQVEGKKMSKSLGNFFTVRDLLDQGVPGEVIRFVFLGTH 304

Query: 298 YRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAAMNDDFNTPEAYS 357
           Y   ++++E   ++A A L +   A+ G  R  PAA          AA+ DD NTP A +
Sbjct: 305 YSKPMDWTERKRDEAMAVLRKWRAAVAG-TRPAPAA-----APSVMAALVDDLNTPGAIA 358

Query: 358 VLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGSAEDEDAAQIEA- 416
            L  + R+ N      +    A   LM  L+D +G     P+          D +++ A 
Sbjct: 359 ELHQLYRDGN------LPGLLASAQLMGLLSDEMGGWDSSPQV---------DLSELAAR 403

Query: 417 LIKLRNDSRATKDWANADLARDKLNEMGI 445
           L ++R  +  TKD+   D  +  L   G+
Sbjct: 404 LAEVREAAIGTKDFTQVDRMKAALIAAGV 432