Pairwise Alignments

Query, 204 a.a., Holliday junction branch migration protein RuvA from Vibrio cholerae E7946 ATCC 55056

Subject, 207 a.a., Holliday junction DNA helicase motor protein from Synechococcus elongatus PCC 7942

 Score =  136 bits (342), Expect = 3e-37
 Identities = 78/209 (37%), Positives = 124/209 (59%), Gaps = 16/209 (7%)

Query: 1   MIGRLRGTL--IEKLPPQILI--EVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVRED 56
           MIG L+G+L  + K   ++L+  +V G+GYEVQ P   + ELP  G+   ++TH  VRED
Sbjct: 1   MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60

Query: 57  AQLLYGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGV 116
             LL+GF  ++ER LFR++I  +G+GP++GLA+L  ++  + V  +   +   L + PGV
Sbjct: 61  QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120

Query: 117 GKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPP 176
           G KTAERL +E++ +L  W       P+  AAP+ +        QE+    LLALGY   
Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLLPSATAAPIAA-------VQEDVEMTLLALGYNNR 173

Query: 177 QASKAVSQVA-----KAGMSSEELIREAL 200
           +  +A++ +A     ++G  +E+ IREA+
Sbjct: 174 EILQALTAIAQENLVQSGQPAEDWIREAI 202