Pairwise Alignments

Query, 204 a.a., Holliday junction branch migration protein RuvA from Vibrio cholerae E7946 ATCC 55056

Subject, 205 a.a., Holliday junction DNA helicase RuvA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  247 bits (631), Expect = 9e-71
 Identities = 125/205 (60%), Positives = 159/205 (77%), Gaps = 1/205 (0%)

Query: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60
           MIGRLRG LIEK  P++LI+V G+GYE+QMP++  YELP + +   +YTHFVVREDAQLL
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60

Query: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120
           YGF T  ER+LFR +IKANGVGPK+ L ILSGMTA++FV CVE++DI TL+KLPGVGKKT
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPV-IAQNAQEEAMSALLALGYKPPQAS 179
           AERL+VEM+D+LK      + +        + +P  +  +A+E+A+SAL++LGYKPPQAS
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180

Query: 180 KAVSQVAKAGMSSEELIREALKSMV 204
           KAVS   K GM SE LI+ ALKSM+
Sbjct: 181 KAVSAAFKEGMDSETLIKAALKSML 205