Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., ATPase related to the helicase subunit of the Holliday junction resolvase from Pseudomonas stutzeri RCH2

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 72/306 (23%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +R   L +Y GQ+H+  + +   +A  + Q AL  ++ +GPPG+GKTTLA ++A     +
Sbjct: 17  LRAASLDEYVGQEHLLARGKPLREA--LEQGALHSMVFWGPPGVGKTTLARLLAKVSDAH 74

Query: 85  IRTTSGPV-----LEKAGDLA-ALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLD 138
             T S  +     + +A ++A           +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 139 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRS 198
                                IGATT   S                     +L + +   
Sbjct: 134 -------------------IFIGATTENPSF--------------------ELNNALLSR 154

Query: 199 AQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADRALNMLDV 258
           A+   L    E AL              +L+ R    +E KG G +  +  + +  ML  
Sbjct: 155 ARVYVLKSLDEAAL-------------RKLVARA--LSEPKGLGDLQLELPEESFQMLLA 199

Query: 259 DHQGFDYMDRKLLLAIMEKFS-----GGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYL 313
              G    D + LL ++E  S     GG +  D L   +G+ +   +   E F  Q   L
Sbjct: 200 AADG----DGRRLLNLLENASDLAEQGGTISTDLLQDLLGDSRRRFDKGGEAFYDQISAL 255

Query: 314 QRTPRG 319
            ++ RG
Sbjct: 256 HKSVRG 261